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The map label for this gene is cbiD [H]

Identifier: 150005592

GI number: 150005592

Start: 3892940

End: 3894736

Strand: Reverse

Name: cbiD [H]

Synonym: BVU_3080

Alternate gene names: 150005592

Gene position: 3894736-3892940 (Counterclockwise)

Preceding gene: 150005593

Following gene: 150005588

Centisome position: 75.43

GC content: 48.02

Gene sequence:

>1797_bases
ATGATACTGATTTTAGGAGGAACCACCGAAGGACGCACCGCCGTGAAAGTTGCCGATGAAGCCGGAAAGCCCTACTTCTA
CTCTACCAAAGGAGAATGGCAGGAGATACAATGCAAGCACGGCATCCGTATCACCGGAGGAATGGACACGGAGAAAATGG
AAAGTTTCTGCCGCCAAAACAACATCCGTTTGTTGGTGGATGCTGCCCACCCGTTTGCCTCCCAACTCCACCGGACTGTG
GATGAAACAAGCCGGACGCTACATCTTCCTGTCATACGTTTTGAAAGGAAGTATCCTCCACGCACCGAAAACATCATCTG
GTGTGAAGACTATGCAGATGCCATTTACCGGTTAGAGAAAGCAGGAACCGATCACCTGCTGGCACTGACCGGAGTACAGA
CCATCGGGAAGTTACGCCCTTATTGGGAGAAACATACCTGTTGGTTCCGCGTACTGGAACGGGAAACTTCCATCACATTA
GCCCAAGAACAAGGCTTCCCGAAAGGAAATCTGGTATTCTATCATGCCGGAGAATCCGAAACTCTTTTATTAGAGACACT
ACATCCACAGGCCATTCTGACCAAGGAAAGCGGAGAATCCGGAGGATTTTCGGAGAAAGTGAAAGCGGCACAGGCTGCAA
AAATCCCGGTCTTTGCTATAAAACGCCCTCCCCTTCCCAGGCATTTCATGATCGTTACCGGTGAATATGGATTGAGAAAA
CAGATAGAAAAGAACATCCCTGCTTTTTACCCGTTGAGAAGCGGCTACACCACAGGGGCCTGCGCTACTGCAGCTGCAAA
AGCAGCATTGACGGCTCTGATTTTAGGGGAAGAACAGAAAATGATATCCTTCCGCCTTCCCGATGACGAGGAAATGACCT
TACCGGTAGCCCATACAGAAATAGAAAAGAACAGTGCCACCTGCACCGTTGTTAAAGATGCGGGAGATGATCCGGATGTC
ACTCACGGCGCATCCATTGTGGTAACGGTAAGTTTTAGCAATCACCCGGACATCCGTTTCCTGCAAGGTGAAGGAGTGGG
ACGAGTCACCCTTCCGGGGCTGGGATTGGAAATCGGGGAACCCGCCATCAATCGCATCCCCCGACAAATGATAATGAAAG
AATTATCGGCGCTTTATGACAAAGGGCTGGATGTTACCATTTCCGTTCCCGGAGGAAAAGAGTTGGCACAACGTACTTTC
AATCCTAAACTAGGAATTGTGGACGGCATTTCCATCATTGGAACTTCGGGCATAGTCCGTCCTTTTTCTTCAGAAGCTTT
TGTCGAGGCTATCCGCAGGGAAGTGGAGGTTTGTGTGGCTGTGGGCTCATCCAGACTCATCATTAATTCGGGAGCAAAAA
GCGAACGTTTTGTGAAGAAGGAGTATCCGGGATTACCTGCTCAGGCTTTTGTACATTATGGAAATTTTATAGGGGAGACA
CTCAAGATAGCTGCCAAGCTTAAGGTTCCATTGGTTACTTTAGGCATTATGATAGGCAAGGCGGTGAAACTGGCCGAAGG
AAATCTGGACACACACAGTAAGAAAGTGGTGATGAATAAAGAATTCCTAAGGCAGGTGGCAATGGAAGCCGGATGCTCTC
CGGATGTTGAAAGCATGATAGAAAGGTTGACATTAGCCCGTGAATTATGGACCTTGCTGTCTGAAGAAGACGGCGGAAAG
TTCTTTCCGTGTTTGTTGGAACATTGTTTTGCGCATTGCGTCCCCTTATTGCCCGAAGGAAAATTGACAATCCTCTTGAT
TGATGAAGAAGGAAATATTCCTTTCAGGATACAATAA

Upstream 100 bases:

>100_bases
GGCGAAGCGATAGACAACCGGAAAGGTCTGTCCCGGCTCTATGCGCACGAGTTCAAACACTTGTTCAGAAAGTAAAAAAA
GAATCATTCACATCCAGCCT

Downstream 100 bases:

>100_bases
CTGATTATTTAGACGCTGCTGCTAAACGGAAGCCAATATAGCAGTGACCTGTTCTAACAATTCCTCTATGGTATCTACCT
TTATCGTCCTCCCGGCTACC

Product: precorrin-6x reductase/cobalamin biosynthetic protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 598

Protein sequence:

>598_residues
MILILGGTTEGRTAVKVADEAGKPYFYSTKGEWQEIQCKHGIRITGGMDTEKMESFCRQNNIRLLVDAAHPFASQLHRTV
DETSRTLHLPVIRFERKYPPRTENIIWCEDYADAIYRLEKAGTDHLLALTGVQTIGKLRPYWEKHTCWFRVLERETSITL
AQEQGFPKGNLVFYHAGESETLLLETLHPQAILTKESGESGGFSEKVKAAQAAKIPVFAIKRPPLPRHFMIVTGEYGLRK
QIEKNIPAFYPLRSGYTTGACATAAAKAALTALILGEEQKMISFRLPDDEEMTLPVAHTEIEKNSATCTVVKDAGDDPDV
THGASIVVTVSFSNHPDIRFLQGEGVGRVTLPGLGLEIGEPAINRIPRQMIMKELSALYDKGLDVTISVPGGKELAQRTF
NPKLGIVDGISIIGTSGIVRPFSSEAFVEAIRREVEVCVAVGSSRLIINSGAKSERFVKKEYPGLPAQAFVHYGNFIGET
LKIAAKLKVPLVTLGIMIGKAVKLAEGNLDTHSKKVVMNKEFLRQVAMEAGCSPDVESMIERLTLARELWTLLSEEDGGK
FFPCLLEHCFAHCVPLLPEGKLTILLIDEEGNIPFRIQ

Sequences:

>Translated_598_residues
MILILGGTTEGRTAVKVADEAGKPYFYSTKGEWQEIQCKHGIRITGGMDTEKMESFCRQNNIRLLVDAAHPFASQLHRTV
DETSRTLHLPVIRFERKYPPRTENIIWCEDYADAIYRLEKAGTDHLLALTGVQTIGKLRPYWEKHTCWFRVLERETSITL
AQEQGFPKGNLVFYHAGESETLLLETLHPQAILTKESGESGGFSEKVKAAQAAKIPVFAIKRPPLPRHFMIVTGEYGLRK
QIEKNIPAFYPLRSGYTTGACATAAAKAALTALILGEEQKMISFRLPDDEEMTLPVAHTEIEKNSATCTVVKDAGDDPDV
THGASIVVTVSFSNHPDIRFLQGEGVGRVTLPGLGLEIGEPAINRIPRQMIMKELSALYDKGLDVTISVPGGKELAQRTF
NPKLGIVDGISIIGTSGIVRPFSSEAFVEAIRREVEVCVAVGSSRLIINSGAKSERFVKKEYPGLPAQAFVHYGNFIGET
LKIAAKLKVPLVTLGIMIGKAVKLAEGNLDTHSKKVVMNKEFLRQVAMEAGCSPDVESMIERLTLARELWTLLSEEDGGK
FFPCLLEHCFAHCVPLLPEGKLTILLIDEEGNIPFRIQ
>Mature_598_residues
MILILGGTTEGRTAVKVADEAGKPYFYSTKGEWQEIQCKHGIRITGGMDTEKMESFCRQNNIRLLVDAAHPFASQLHRTV
DETSRTLHLPVIRFERKYPPRTENIIWCEDYADAIYRLEKAGTDHLLALTGVQTIGKLRPYWEKHTCWFRVLERETSITL
AQEQGFPKGNLVFYHAGESETLLLETLHPQAILTKESGESGGFSEKVKAAQAAKIPVFAIKRPPLPRHFMIVTGEYGLRK
QIEKNIPAFYPLRSGYTTGACATAAAKAALTALILGEEQKMISFRLPDDEEMTLPVAHTEIEKNSATCTVVKDAGDDPDV
THGASIVVTVSFSNHPDIRFLQGEGVGRVTLPGLGLEIGEPAINRIPRQMIMKELSALYDKGLDVTISVPGGKELAQRTF
NPKLGIVDGISIIGTSGIVRPFSSEAFVEAIRREVEVCVAVGSSRLIINSGAKSERFVKKEYPGLPAQAFVHYGNFIGET
LKIAAKLKVPLVTLGIMIGKAVKLAEGNLDTHSKKVVMNKEFLRQVAMEAGCSPDVESMIERLTLARELWTLLSEEDGGK
FFPCLLEHCFAHCVPLLPEGKLTILLIDEEGNIPFRIQ

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 66021; Mature: 66021

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS51014 COBK_CBIJ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILILGGTTEGRTAVKVADEAGKPYFYSTKGEWQEIQCKHGIRITGGMDTEKMESFCRQN
CEEEEECCCCCCEEEEEECCCCCCEEECCCCCCEEEEECCCEEEECCCCHHHHHHHHHCC
NIRLLVDAAHPFASQLHRTVDETSRTLHLPVIRFERKYPPRTENIIWCEDYADAIYRLEK
CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEECHHHHHHHHHHH
AGTDHLLALTGVQTIGKLRPYWEKHTCWFRVLERETSITLAQEQGFPKGNLVFYHAGESE
CCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCEEEEECCCCC
TLLLETLHPQAILTKESGESGGFSEKVKAAQAAKIPVFAIKRPPLPRHFMIVTGEYGLRK
EEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCHHHH
QIEKNIPAFYPLRSGYTTGACATAAAKAALTALILGEEQKMISFRLPDDEEMTLPVAHTE
HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCEEEEEEEEE
IEKNSATCTVVKDAGDDPDVTHGASIVVTVSFSNHPDIRFLQGEGVGRVTLPGLGLEIGE
ECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCC
PAINRIPRQMIMKELSALYDKGLDVTISVPGGKELAQRTFNPKLGIVDGISIIGTSGIVR
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCEECCCCEECCCCCCC
PFSSEAFVEAIRREVEVCVAVGSSRLIINSGAKSERFVKKEYPGLPAQAFVHYGNFIGET
CCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
LKIAAKLKVPLVTLGIMIGKAVKLAEGNLDTHSKKVVMNKEFLRQVAMEAGCSPDVESMI
HEEHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
ERLTLARELWTLLSEEDGGKFFPCLLEHCFAHCVPLLPEGKLTILLIDEEGNIPFRIQ
HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEC
>Mature Secondary Structure
MILILGGTTEGRTAVKVADEAGKPYFYSTKGEWQEIQCKHGIRITGGMDTEKMESFCRQN
CEEEEECCCCCCEEEEEECCCCCCEEECCCCCCEEEEECCCEEEECCCCHHHHHHHHHCC
NIRLLVDAAHPFASQLHRTVDETSRTLHLPVIRFERKYPPRTENIIWCEDYADAIYRLEK
CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEECHHHHHHHHHHH
AGTDHLLALTGVQTIGKLRPYWEKHTCWFRVLERETSITLAQEQGFPKGNLVFYHAGESE
CCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEHHHCCCCCCCEEEEECCCCC
TLLLETLHPQAILTKESGESGGFSEKVKAAQAAKIPVFAIKRPPLPRHFMIVTGEYGLRK
EEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCHHHH
QIEKNIPAFYPLRSGYTTGACATAAAKAALTALILGEEQKMISFRLPDDEEMTLPVAHTE
HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCEEEEEEEEE
IEKNSATCTVVKDAGDDPDVTHGASIVVTVSFSNHPDIRFLQGEGVGRVTLPGLGLEIGE
ECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCC
PAINRIPRQMIMKELSALYDKGLDVTISVPGGKELAQRTFNPKLGIVDGISIIGTSGIVR
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCEECCCCEECCCCCCC
PFSSEAFVEAIRREVEVCVAVGSSRLIINSGAKSERFVKKEYPGLPAQAFVHYGNFIGET
CCCHHHHHHHHHHHHHEEEEECCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
LKIAAKLKVPLVTLGIMIGKAVKLAEGNLDTHSKKVVMNKEFLRQVAMEAGCSPDVESMI
HEEHHHCCCHHHHHHHHHHCEEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
ERLTLARELWTLLSEEDGGKFFPCLLEHCFAHCVPLLPEGKLTILLIDEEGNIPFRIQ
HHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA