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The map label for this gene is yjhR [C]

Identifier: 150004508

GI number: 150004508

Start: 2536571

End: 2538463

Strand: Reverse

Name: yjhR [C]

Synonym: BVU_1958

Alternate gene names: 150004508

Gene position: 2538463-2536571 (Counterclockwise)

Preceding gene: 150004512

Following gene: 150004505

Centisome position: 49.16

GC content: 44.11

Gene sequence:

>1893_bases
ATGAACCAACATATACCCCTTTCTAATATAATTAACAAACTACAACGCAAAGAGTTGTTACTAAAATTAGAATATGATTA
CGAAAAAGAGACTTTCAGGCAACAGACTGAAGCTATGGGCATCGGGCGCAAAGTGAAACGGGGTATGTGCTGGTATCCTA
TATCGGCAGGCAGAAGCTATTATAACTCATTGAATCAATTGGTTGTAGAAGTTGAAAGGCAAGAAGACAAAGACATAGAA
CATGTATTTGAATTCGGCCGTCCGGTATGCTTTTTTACGCAAAATGCATCAGGCCAATTACATTATTTCAATTTTACGGC
AACTGTCAACTACGTGGACGAAGACCGAATGGTAATCGTTCTCCCCTCGGCAGATGCATTGCTCAGCATACAGGCAACCG
AGCGACAATTGGGAGTACAGCTTTATTTTGATGAAACCAGTTACCGGTTGATGTTCGAAGCGTTGGGACAAGTCCTCAAG
GCAAAAGGGAATCGTCTGGCAGAGTTACGTGAGATTTTTCATGGCAACCAAAAGGCGGAAACTTTCAGTTTCGGCTTCAC
CCGTTTCCCCTGGTTAAACAATACGCAGGAGGAAGCAGTAAATAAAGTGATGCATGCCAAAGATGTTGCTATAGTCCACG
GTCCGCCCGGAACCGGTAAAACTACCACATTGGTAGAAGCCATTTACGAGACCCTTCACCGGGAAAATCAAGTCATGGTG
TGTGCACAGAGCAATATGGCTGTAGACTGGATTAGCGAGAAACTGGTGGACCGGGGTGTTCCCGTTCTCCGTATTGGTAA
TCCCATCCGCGTCAATGACAAAATGCTTGCTTTTACCTATGAACGCCGTTTTGAAAGCCATCCCGATTATCCGCAATTAT
GGAGTATCCGAAAAGCAATACGCGAGCTCTACGGACGTTCGCGCAAAGGAGCGGAACGTGAGAATATCCGACAGAAAATA
AACTCACTGAAAGACCGTGCCACCGAACTGGAAATTCGCATCAACGAAGCATTGTTCGGCGAAGCACGTGTGATAGCCTG
CACACTGGTAAGTTCCGCCAACCGAATATTGACAGGACGCAAATTCAGTACCTTATTCATAGACGAAGCCGCACAAGCTC
TAGAACCTGCCTGCTGGATTGCCATCCGCAAAGCAGACCGTGTCATTCTGGCCGGTGATTATTGCCAGCTTCCTCCTACC
ATTAAATGCATGGAAGCAGCTCGTGGAGGATTAGACCGGACACTGATGCAGGAGATTGCAGACAACAAACCCGACACTGT
ATCCTTGTTAAAGGTACAATATAGAATGAATGACGAAATTATGCGTTTCTCTTCAGAATGGTTCTATCAGGGTGAACTGA
AATCAGCTCCCGAAGTAAAATATCGGAGTATATTGGACTATGACACACCGATAGAATGGATAAATACGGAAGGAATGGAA
TGCAACGAAGAGTTTGTGGGTGAAAGCTTCGGCCGTATCAATAAAGAGGAGGCGGCACTCTCCATTTCCCAACTCACCAA
CTATATCAATAAAATAGGTAAAGACCGTTTTCTGGAAGAACGGATTGATGTGGGACTGATTTCTCCTTATAAAGCACAAG
TACAATATCTCCGTCAACTGATAAAACGAGATGCTTTCTTCAAGCCTTACCGACACCTTATCACCATCAATACGGTAGAT
GGTTTTCAGGGACAGGAACGAGACGTTATCCTCATCAGTTTAGTACGTGCAAATGAAGAGGGACAAATTGGTTTTCTAAA
TGACTTGCGACGAATGAATGTAGCAATTACACGTGCACGCATGAAACTTATTATATTAGGAGATGCCTCTACGCTGACGA
AACATCCGTTTTATAAGAAGTTATACGAATATATCTTGGCGCTGCAAGAATAA

Upstream 100 bases:

>100_bases
ATTCTTGTGTAATCTATAATACGTTTAACAAAATAAAACATAAAGTCCTACCTAAAGGATTATTATTATCTTTGCAATTC
TTATAGAAAAAAGCATCATT

Downstream 100 bases:

>100_bases
AAGAAGGAGGGCAGAACTCCATGACACTCTTTTTCAGATTGTCATTCGTTTTGCTCTCCTTAAATATTTTTTATTAAAGC
ACGTTCTTCATTCCTCTACT

Product: putative helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MNQHIPLSNIINKLQRKELLLKLEYDYEKETFRQQTEAMGIGRKVKRGMCWYPISAGRSYYNSLNQLVVEVERQEDKDIE
HVFEFGRPVCFFTQNASGQLHYFNFTATVNYVDEDRMVIVLPSADALLSIQATERQLGVQLYFDETSYRLMFEALGQVLK
AKGNRLAELREIFHGNQKAETFSFGFTRFPWLNNTQEEAVNKVMHAKDVAIVHGPPGTGKTTTLVEAIYETLHRENQVMV
CAQSNMAVDWISEKLVDRGVPVLRIGNPIRVNDKMLAFTYERRFESHPDYPQLWSIRKAIRELYGRSRKGAERENIRQKI
NSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPT
IKCMEAARGGLDRTLMQEIADNKPDTVSLLKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPIEWINTEGME
CNEEFVGESFGRINKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVD
GFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYILALQE

Sequences:

>Translated_630_residues
MNQHIPLSNIINKLQRKELLLKLEYDYEKETFRQQTEAMGIGRKVKRGMCWYPISAGRSYYNSLNQLVVEVERQEDKDIE
HVFEFGRPVCFFTQNASGQLHYFNFTATVNYVDEDRMVIVLPSADALLSIQATERQLGVQLYFDETSYRLMFEALGQVLK
AKGNRLAELREIFHGNQKAETFSFGFTRFPWLNNTQEEAVNKVMHAKDVAIVHGPPGTGKTTTLVEAIYETLHRENQVMV
CAQSNMAVDWISEKLVDRGVPVLRIGNPIRVNDKMLAFTYERRFESHPDYPQLWSIRKAIRELYGRSRKGAERENIRQKI
NSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPT
IKCMEAARGGLDRTLMQEIADNKPDTVSLLKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPIEWINTEGME
CNEEFVGESFGRINKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVD
GFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYILALQE
>Mature_630_residues
MNQHIPLSNIINKLQRKELLLKLEYDYEKETFRQQTEAMGIGRKVKRGMCWYPISAGRSYYNSLNQLVVEVERQEDKDIE
HVFEFGRPVCFFTQNASGQLHYFNFTATVNYVDEDRMVIVLPSADALLSIQATERQLGVQLYFDETSYRLMFEALGQVLK
AKGNRLAELREIFHGNQKAETFSFGFTRFPWLNNTQEEAVNKVMHAKDVAIVHGPPGTGKTTTLVEAIYETLHRENQVMV
CAQSNMAVDWISEKLVDRGVPVLRIGNPIRVNDKMLAFTYERRFESHPDYPQLWSIRKAIRELYGRSRKGAERENIRQKI
NSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPT
IKCMEAARGGLDRTLMQEIADNKPDTVSLLKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPIEWINTEGME
CNEEFVGESFGRINKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVD
GFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYILALQE

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI119392094, Length=632, Percent_Identity=31.0126582278481, Blast_Score=244, Evalue=2e-64,
Organism=Homo sapiens, GI18375673, Length=457, Percent_Identity=33.6980306345733, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI122937299, Length=463, Percent_Identity=29.1576673866091, Blast_Score=176, Evalue=7e-44,
Organism=Homo sapiens, GI113722133, Length=521, Percent_Identity=27.831094049904, Blast_Score=160, Evalue=4e-39,
Organism=Homo sapiens, GI254826809, Length=522, Percent_Identity=25.4789272030651, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI14251207, Length=477, Percent_Identity=28.3018867924528, Blast_Score=138, Evalue=2e-32,
Organism=Homo sapiens, GI194272168, Length=466, Percent_Identity=28.3261802575107, Blast_Score=137, Evalue=4e-32,
Organism=Homo sapiens, GI14211540, Length=466, Percent_Identity=28.3261802575107, Blast_Score=137, Evalue=4e-32,
Organism=Homo sapiens, GI255759908, Length=467, Percent_Identity=28.051391862955, Blast_Score=129, Evalue=1e-29,
Organism=Homo sapiens, GI156105693, Length=506, Percent_Identity=24.901185770751, Blast_Score=117, Evalue=5e-26,
Organism=Homo sapiens, GI156105695, Length=506, Percent_Identity=24.901185770751, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI255759910, Length=296, Percent_Identity=30.0675675675676, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI28626521, Length=304, Percent_Identity=27.6315789473684, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI255759906, Length=420, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI54792138, Length=473, Percent_Identity=24.5243128964059, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI38788372, Length=298, Percent_Identity=29.1946308724832, Blast_Score=80, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17510163, Length=527, Percent_Identity=29.6015180265655, Blast_Score=199, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI71981659, Length=466, Percent_Identity=28.5407725321888, Blast_Score=152, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17533985, Length=448, Percent_Identity=26.7857142857143, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17533987, Length=448, Percent_Identity=26.7857142857143, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI133958006, Length=295, Percent_Identity=26.4406779661017, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71986364, Length=487, Percent_Identity=25.4620123203285, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17535407, Length=259, Percent_Identity=27.7992277992278, Blast_Score=77, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17541326, Length=266, Percent_Identity=27.4436090225564, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538027, Length=255, Percent_Identity=27.0588235294118, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322835, Length=465, Percent_Identity=34.8387096774194, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6323726, Length=467, Percent_Identity=33.6188436830835, Blast_Score=209, Evalue=1e-54,
Organism=Saccharomyces cerevisiae, GI6323462, Length=564, Percent_Identity=29.0780141843972, Blast_Score=179, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6321958, Length=456, Percent_Identity=27.4122807017544, Blast_Score=156, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6321024, Length=499, Percent_Identity=25.0501002004008, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI18859757, Length=461, Percent_Identity=33.4056399132321, Blast_Score=217, Evalue=2e-56,
Organism=Drosophila melanogaster, GI161077698, Length=537, Percent_Identity=27.0018621973929, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24640932, Length=537, Percent_Identity=27.0018621973929, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI281363531, Length=463, Percent_Identity=30.2375809935205, Blast_Score=141, Evalue=2e-33,
Organism=Drosophila melanogaster, GI281363529, Length=463, Percent_Identity=30.2375809935205, Blast_Score=141, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24660647, Length=564, Percent_Identity=26.9503546099291, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI221330969, Length=564, Percent_Identity=26.9503546099291, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI45550425, Length=546, Percent_Identity=25.8241758241758, Blast_Score=122, Evalue=8e-28,
Organism=Drosophila melanogaster, GI62471854, Length=483, Percent_Identity=25.6728778467909, Blast_Score=110, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24656854, Length=483, Percent_Identity=25.6728778467909, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24649577, Length=464, Percent_Identity=25.6465517241379, Blast_Score=105, Evalue=1e-22,
Organism=Drosophila melanogaster, GI45553113, Length=474, Percent_Identity=25.3164556962025, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI281361618, Length=303, Percent_Identity=27.0627062706271, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281361616, Length=303, Percent_Identity=27.0627062706271, Blast_Score=75, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72812; Mature: 72812

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQHIPLSNIINKLQRKELLLKLEYDYEKETFRQQTEAMGIGRKVKRGMCWYPISAGRSY
CCCCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCEEEEHHHHHHH
YNSLNQLVVEVERQEDKDIEHVFEFGRPVCFFTQNASGQLHYFNFTATVNYVDEDRMVIV
HHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEEEECCCCEEEE
LPSADALLSIQATERQLGVQLYFDETSYRLMFEALGQVLKAKGNRLAELREIFHGNQKAE
EECCCCEEEEEEHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
TFSFGFTRFPWLNNTQEEAVNKVMHAKDVAIVHGPPGTGKTTTLVEAIYETLHRENQVMV
EEECCCEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
CAQSNMAVDWISEKLVDRGVPVLRIGNPIRVNDKMLAFTYERRFESHPDYPQLWSIRKAI
EECCCCHHHHHHHHHHHCCCCEEEECCEEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHH
RELYGRSRKGAERENIRQKINSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGR
HHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCHHCCCCEEEEEEEHHCCCCEEECC
KFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARGGLDRTLMQEIA
CEEEEEHHHHHHHHCCHHEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHH
DNKPDTVSLLKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPIEWINTEGME
CCCCCEEEEEEEEECCCHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCCCEECCCCCC
CNEEFVGESFGRINKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IKRDAFFKPYRHLITINTVDGFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRAR
HHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEHHHHHHHHHHHEEEEE
MKLIILGDASTLTKHPFYKKLYEYILALQE
EEEEEEECCHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQHIPLSNIINKLQRKELLLKLEYDYEKETFRQQTEAMGIGRKVKRGMCWYPISAGRSY
CCCCCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCEEEEHHHHHHH
YNSLNQLVVEVERQEDKDIEHVFEFGRPVCFFTQNASGQLHYFNFTATVNYVDEDRMVIV
HHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCEEEEEEEEEEEEEECCCCEEEE
LPSADALLSIQATERQLGVQLYFDETSYRLMFEALGQVLKAKGNRLAELREIFHGNQKAE
EECCCCEEEEEEHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
TFSFGFTRFPWLNNTQEEAVNKVMHAKDVAIVHGPPGTGKTTTLVEAIYETLHRENQVMV
EEECCCEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
CAQSNMAVDWISEKLVDRGVPVLRIGNPIRVNDKMLAFTYERRFESHPDYPQLWSIRKAI
EECCCCHHHHHHHHHHHCCCCEEEECCEEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHH
RELYGRSRKGAERENIRQKINSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGR
HHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCHHCCCCEEEEEEEHHCCCCEEECC
KFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARGGLDRTLMQEIA
CEEEEEHHHHHHHHCCHHEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHH
DNKPDTVSLLKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPIEWINTEGME
CCCCCEEEEEEEEECCCHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCCCEECCCCCC
CNEEFVGESFGRINKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IKRDAFFKPYRHLITINTVDGFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRAR
HHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEHHHHHHHHHHHEEEEE
MKLIILGDASTLTKHPFYKKLYEYILALQE
EEEEEEECCHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]