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The map label for this gene is yocR [H]

Identifier: 150004055

GI number: 150004055

Start: 1973751

End: 1975115

Strand: Direct

Name: yocR [H]

Synonym: BVU_1490

Alternate gene names: 150004055

Gene position: 1973751-1975115 (Clockwise)

Preceding gene: 150004053

Following gene: 150004056

Centisome position: 38.23

GC content: 42.12

Gene sequence:

>1365_bases
ATGCAAAAAAGCGAAAGAGTAAATTTCGGAAGTAAGATTGGGGCTGTTCTGGCGGCGGCAGGTTCGGCTGTAGGACTTGG
TAATATATGGAGGTTTCCCTATGAAACGGGAAATCATGGAGGTGCGGCATTTATCTTAGTATACTTGGCGTGTGTTTTTA
TGTTGGGAATGCCTATTATGATTGCCGAATTCACAGTAGGTCGTCATTCAAAAGCAAGTACGGGACGTGCTTATAAGGTT
TTGGCACCCGGAACTCATTGGAAGTGGTTGGGATATTTGGGGGTTTTGGCCGGTTTTCTTATTCTAGGATATTATTCGGT
AGTGGCAGGATGGACTTTGGAATATATATTGGAAGCGGGAATGAATGGTTTTGCAGATAAGAAGCCGGAAGATTTTGTGG
TTGCTTTCCAGAGTTTTTCGAAGGACCCTGTTCGTCCGCTTATCTGGCTGGTCATCTTTTTATTGGCCACCCATTTTGTT
ATAGTAAAGGGAGTGAAAGATGGAATAGAGAAATCTTCGAAGGTGCTGATGCCTGTTTTGTTTGTACTGATAGTAGTTTT
GGTGGGGTGCTCATTGTCGCTTCCCAATGCGGAAAAAGGTTTGGAGTTTCTGCTGAAGCCTGATTTCAGTAAAGTGAACG
GAGATGTTTTCTTAGGGGCTATGGGGCAGGCGTTCTTTTCCTTGAGTTTGGGAATGGGATGTCTTTCAACCTATGCTTCT
TATTTTGGGAAAGAAACCAAACTGGGAAATACGGCTCTGAGTGTCGGTGTGATTGATACTTTTGTGGCTGTCTTGGCCGG
ATTGATTATTTTTCCGGCGGCCTTTTCTGTAGGTATCCAGCCGGATGCGGGACCATCATTAATTTTTATTACATTGCCTA
ATGTTTTTCAGCAAGCTTTTAGCGGTGTGCCGATATTAGCTTATATTTTCTCGGTGATGTTCTATGTCTTGTTGGCTTTG
GCTGCATTGACTTCTACTATTTCTCTACATGAAGTGGTGACGGCTTTTCTGCACGAGGAATTCAATTTAACTCGTGGCCG
TGCTGCTAGATTGGTCACTTTCGGGTGCATTATAATTGGAGTCATTTCTTCCTTGTCATTGGGAGTTATGCAGAAATATA
CGCTGTTTGATAAGGGATTCTTTGACTTACTTGATTTTGTCACTGCAAAAATAATGCTTCCTTTGGGTGGCTTGCTGGTA
TGTATCTTTGTAGGATGGTATTTGAAACGTTCCGTTTCTTATGAAGAATTGACCAATGGGGGAAAACTGAAAGCAGGTCT
TTTCAATCTGTATATCTTCTTGTTGAGATACGTGGCACCTGTGGCTATCATTTTGATTTTTATCAATGAATTAGGGCTAA
TTTAG

Upstream 100 bases:

>100_bases
AGCATACTTTAATTTTTTTGTGATTCGTCGCAAAAGTACGATTAATTTTATACTTTTGCAGGCTAACCAGTGTTGATTTA
TAATAATTTGATAGTTTTTT

Downstream 100 bases:

>100_bases
AATTGTAATGTGGAAAGACTTCTTCTATTTTTCGAAAAGCGAACGAAGAGCTATACTTTTTTTGTTGACTTTGCTTTTCA
TATTTATGTGTATATGGGTT

Product: Na+-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MQKSERVNFGSKIGAVLAAAGSAVGLGNIWRFPYETGNHGGAAFILVYLACVFMLGMPIMIAEFTVGRHSKASTGRAYKV
LAPGTHWKWLGYLGVLAGFLILGYYSVVAGWTLEYILEAGMNGFADKKPEDFVVAFQSFSKDPVRPLIWLVIFLLATHFV
IVKGVKDGIEKSSKVLMPVLFVLIVVLVGCSLSLPNAEKGLEFLLKPDFSKVNGDVFLGAMGQAFFSLSLGMGCLSTYAS
YFGKETKLGNTALSVGVIDTFVAVLAGLIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAL
AALTSTISLHEVVTAFLHEEFNLTRGRAARLVTFGCIIIGVISSLSLGVMQKYTLFDKGFFDLLDFVTAKIMLPLGGLLV
CIFVGWYLKRSVSYEELTNGGKLKAGLFNLYIFLLRYVAPVAIILIFINELGLI

Sequences:

>Translated_454_residues
MQKSERVNFGSKIGAVLAAAGSAVGLGNIWRFPYETGNHGGAAFILVYLACVFMLGMPIMIAEFTVGRHSKASTGRAYKV
LAPGTHWKWLGYLGVLAGFLILGYYSVVAGWTLEYILEAGMNGFADKKPEDFVVAFQSFSKDPVRPLIWLVIFLLATHFV
IVKGVKDGIEKSSKVLMPVLFVLIVVLVGCSLSLPNAEKGLEFLLKPDFSKVNGDVFLGAMGQAFFSLSLGMGCLSTYAS
YFGKETKLGNTALSVGVIDTFVAVLAGLIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAL
AALTSTISLHEVVTAFLHEEFNLTRGRAARLVTFGCIIIGVISSLSLGVMQKYTLFDKGFFDLLDFVTAKIMLPLGGLLV
CIFVGWYLKRSVSYEELTNGGKLKAGLFNLYIFLLRYVAPVAIILIFINELGLI
>Mature_454_residues
MQKSERVNFGSKIGAVLAAAGSAVGLGNIWRFPYETGNHGGAAFILVYLACVFMLGMPIMIAEFTVGRHSKASTGRAYKV
LAPGTHWKWLGYLGVLAGFLILGYYSVVAGWTLEYILEAGMNGFADKKPEDFVVAFQSFSKDPVRPLIWLVIFLLATHFV
IVKGVKDGIEKSSKVLMPVLFVLIVVLVGCSLSLPNAEKGLEFLLKPDFSKVNGDVFLGAMGQAFFSLSLGMGCLSTYAS
YFGKETKLGNTALSVGVIDTFVAVLAGLIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAL
AALTSTISLHEVVTAFLHEEFNLTRGRAARLVTFGCIIIGVISSLSLGVMQKYTLFDKGFFDLLDFVTAKIMLPLGGLLV
CIFVGWYLKRSVSYEELTNGGKLKAGLFNLYIFLLRYVAPVAIILIFINELGLI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=406, Percent_Identity=27.8325123152709, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI188528618, Length=420, Percent_Identity=23.5714285714286, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=29.2929292929293, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI21361581, Length=430, Percent_Identity=24.8837209302326, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI51468073, Length=299, Percent_Identity=25.4180602006689, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4507041, Length=466, Percent_Identity=24.8927038626609, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI289191351, Length=408, Percent_Identity=26.4705882352941, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4557046, Length=408, Percent_Identity=26.4705882352941, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI289191377, Length=404, Percent_Identity=26.7326732673267, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI7657587, Length=474, Percent_Identity=22.9957805907173, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI171184408, Length=436, Percent_Identity=25, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI171184406, Length=436, Percent_Identity=25, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI171184404, Length=436, Percent_Identity=25, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI33354281, Length=304, Percent_Identity=27.3026315789474, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI11181770, Length=304, Percent_Identity=25.6578947368421, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=25.1655629139073, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI134304856, Length=355, Percent_Identity=26.1971830985915, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI12408638, Length=295, Percent_Identity=26.4406779661017, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI197276623, Length=343, Percent_Identity=24.7813411078717, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI54607094, Length=343, Percent_Identity=24.7813411078717, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI5032097, Length=344, Percent_Identity=25.5813953488372, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI21361693, Length=224, Percent_Identity=25.8928571428571, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI218563756, Length=341, Percent_Identity=26.099706744868, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=32.2314049586777, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI55749589, Length=284, Percent_Identity=23.2394366197183, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=427, Percent_Identity=28.5714285714286, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17555248, Length=421, Percent_Identity=24.9406175771971, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI25146584, Length=411, Percent_Identity=22.6277372262774, Blast_Score=89, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17535731, Length=124, Percent_Identity=35.4838709677419, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI133952791, Length=287, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=111, Percent_Identity=35.1351351351351, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71998244, Length=373, Percent_Identity=26.5415549597855, Blast_Score=78, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI212642127, Length=118, Percent_Identity=30.5084745762712, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24762620, Length=401, Percent_Identity=26.9326683291771, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136952, Length=458, Percent_Identity=23.7991266375546, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI281364394, Length=458, Percent_Identity=24.0174672489083, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28574704, Length=458, Percent_Identity=24.0174672489083, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136950, Length=458, Percent_Identity=24.0174672489083, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28574702, Length=458, Percent_Identity=24.0174672489083, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24661428, Length=392, Percent_Identity=26.0204081632653, Blast_Score=111, Evalue=8e-25,
Organism=Drosophila melanogaster, GI281365034, Length=461, Percent_Identity=26.6811279826464, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI19921936, Length=390, Percent_Identity=24.3589743589744, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24652942, Length=391, Percent_Identity=25.0639386189258, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI45551088, Length=391, Percent_Identity=25.0639386189258, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19921352, Length=467, Percent_Identity=24.6252676659529, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24584353, Length=467, Percent_Identity=24.6252676659529, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24639853, Length=426, Percent_Identity=25.3521126760563, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI281363702, Length=392, Percent_Identity=26.530612244898, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24582567, Length=454, Percent_Identity=23.7885462555066, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24655079, Length=301, Percent_Identity=26.578073089701, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221329674, Length=512, Percent_Identity=23.6328125, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24639514, Length=512, Percent_Identity=23.6328125, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24639516, Length=297, Percent_Identity=26.2626262626263, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24654186, Length=323, Percent_Identity=26.625386996904, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI45550877, Length=218, Percent_Identity=29.8165137614679, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45551183, Length=218, Percent_Identity=29.8165137614679, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49191; Mature: 49191

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]