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The map label for this gene is rpoE [H]

Identifier: 150004053

GI number: 150004053

Start: 1972685

End: 1973188

Strand: Direct

Name: rpoE [H]

Synonym: BVU_1488

Alternate gene names: 150004053

Gene position: 1972685-1973188 (Clockwise)

Preceding gene: 150004052

Following gene: 150004055

Centisome position: 38.21

GC content: 37.5

Gene sequence:

>504_bases
ATGAAGACAGTCGACTTTACACAGCATTTACTAAGTATACAAACCGAATTATTTCGCTTTGCATTTAAATTGACAGCTGA
CAGAGAAGAGGCTAATGATTTGTTGCAGGAAACTTCACTTAAAGCTTTGGACAACGAAGAGAAGTTTACTCCAGATACGA
ATTTTAAAGGATGGATGTACACCATCATGCGTAATATATTTATAAATAATTATCGTAAAACAGTGCGTGATCAGACTTTC
GTCGATCAGACAGATAACTTGTTCCATTTGAATCTTCCACAGGACTCAGGATTCGATTCTACAGAAGGTGCTTATGATTT
GAAAGAGATACATCGTATCGTGAATGCGTTGCCTAAAGATTACCGTGTGCCGTTTGCTATGTATGTATCAGGATTTAAAT
ATAGGGAAATTGCCGAAAAACTGGGACTTCCGTTGGGAACAGTGAAAAGCCGTATCTTTTTCATTCGTCAGAGGTTGCAG
AATGATCTGAAAGATTTCCGTTAA

Upstream 100 bases:

>100_bases
CCCCTTTGTTGTTAGTTTTTCTGTCGTGACTTTTGCGAGAAGTCGTTAATATTGCAGCAGAAAGCAAAAACAGAAAATAA
CAATTTAAAAATAGATTAAT

Downstream 100 bases:

>100_bases
GTTGACTCTCTATCTTTATTATATAACTTTGACTTTTATCATCACGCCGACTGTTCGCGAAGAATCGTCGGCGTTTCTTT
TTAGGATTTACGCCATATAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKTVDFTQHLLSIQTELFRFAFKLTADREEANDLLQETSLKALDNEEKFTPDTNFKGWMYTIMRNIFINNYRKTVRDQTF
VDQTDNLFHLNLPQDSGFDSTEGAYDLKEIHRIVNALPKDYRVPFAMYVSGFKYREIAEKLGLPLGTVKSRIFFIRQRLQ
NDLKDFR

Sequences:

>Translated_167_residues
MKTVDFTQHLLSIQTELFRFAFKLTADREEANDLLQETSLKALDNEEKFTPDTNFKGWMYTIMRNIFINNYRKTVRDQTF
VDQTDNLFHLNLPQDSGFDSTEGAYDLKEIHRIVNALPKDYRVPFAMYVSGFKYREIAEKLGLPLGTVKSRIFFIRQRLQ
NDLKDFR
>Mature_167_residues
MKTVDFTQHLLSIQTELFRFAFKLTADREEANDLLQETSLKALDNEEKFTPDTNFKGWMYTIMRNIFINNYRKTVRDQTF
VDQTDNLFHLNLPQDSGFDSTEGAYDLKEIHRIVNALPKDYRVPFAMYVSGFKYREIAEKLGLPLGTVKSRIFFIRQRLQ
NDLKDFR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19791; Mature: 19791

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVDFTQHLLSIQTELFRFAFKLTADREEANDLLQETSLKALDNEEKFTPDTNFKGWMY
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKTVRDQTFVDQTDNLFHLNLPQDSGFDSTEGAYDLKEIHRIVNALPKD
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC
YRVPFAMYVSGFKYREIAEKLGLPLGTVKSRIFFIRQRLQNDLKDFR
CCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTVDFTQHLLSIQTELFRFAFKLTADREEANDLLQETSLKALDNEEKFTPDTNFKGWMY
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
TIMRNIFINNYRKTVRDQTFVDQTDNLFHLNLPQDSGFDSTEGAYDLKEIHRIVNALPKD
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC
YRVPFAMYVSGFKYREIAEKLGLPLGTVKSRIFFIRQRLQNDLKDFR
CCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]