| Definition | Bacteroides vulgatus ATCC 8482 chromosome, complete genome. |
|---|---|
| Accession | NC_009614 |
| Length | 5,163,189 |
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The map label for this gene is 150004052
Identifier: 150004052
GI number: 150004052
Start: 1970042
End: 1972516
Strand: Direct
Name: 150004052
Synonym: BVU_1487
Alternate gene names: NA
Gene position: 1970042-1972516 (Clockwise)
Preceding gene: 150004051
Following gene: 150004053
Centisome position: 38.16
GC content: 40.61
Gene sequence:
>2475_bases ATGAAACACAACATTTTATGGGGCATTATCTTGCTTGTGGCAAGTTTGTCATTTACGGCGAAGGCGCAAAAGGCTGTCCA AGGCCAGTTCTCAGTCAAGGGAGTCTTATTAGATTCTTTGTCTAATGAAGGGGAACCGTATTCTACAATCCGTATTTCAT TGAAGAACAATCCTGCAAAGCCGGTGAAACTGGCTGTGACAGGAGCGGACGGCAGGTTTGACGAACGGCTTGCCGTGCCG GGGATTTATCTCATTCATTTTACTTCTGTAGGAAAGTCTCCTGTACAGAAGGAGTTTTCGATATCGGCAAATCGTAGGAA TGTTGATTTGGGTAAGATTCTGATAGCAGAAGCGACTGAAATGTTGAAAGGAGTGGAGGTGGTAGCGCAGAAACCTTTGG TAAAGGCGGAAATAGACAAAGTGACGTATAGTATAGAGGATGATCCGGATTCTAAAACTAATACGACTCTTGAAATGCTC CGTAAAGTTCCGCTGGTGACTGTAGATGGAGAGGATAAAATTCAAGTAAACGGTAGCAGTAAGTTTAAAGTGCATGTTAA TGGCAAGCCGAATAACATGATGAGCAATAATCCTACCGAGGTATTGCGGAGTATGCCGGCCAATTCCATTAAATCTATAG AGGTTATCACCGAGCCTGGGGCTAAATATGACGCGGAAGGGGTGGCGGGCATCTTGAATATTATCACTGTAGGAGCAGGA ATGGAAGGATATACGGTGACATTGAATGGTGGTGCAAGCAATATGCGTGTGTATGGTGGCGGTTATGGTACGGTGCAGTC GGGCAAGTTCACTGTTACCGGTAATTATTCTTATAACTACCAGGGATCTCAAAAGGGATTTGAAGATTCATATCGTGAGG ATTTCACGTCTCAGGAAAATAAATTTTTGGAGTCGCATCGAAGAAGCAAGAGCTATGGCAATTTTCAATTTGGCAGTCTG GAAGGAAGTTATGAGATTGACACTTTGAATCTGATTAGTTTTTCTATGAATCTGATGACTGGCAATTTTACGAATAAGAG GATTGGAAATACCCAGATGACGAATCATGCCGGTAATCCGGTTTACGGTTACGGTTCTTTGGGAAATAATGAATCGGGCT TTGGCGAAGTGGGGGGCAACATGGATTATCAGCATTCGTTTAAAAAGAAAGGGGAACTTCTTACTTTCTCTTATCGTTTT AGCCATTCCCCCAATAACAGTGAAGCGAATACGGATTATGAGGATACGTTGAATGTTCCTTATCTTTTGCAAAACCAATA TTTTAAAAATGATGCCAGCACACAAGAGCATACGGCTCAATTGGACTATACCAATCCGATAAATTCGATACACAGCATTG AAACTGGTATAAAGTATATTTTTCGTAGAAGTAAAAGTGATGGTAAATATTATCTGGCCGATAAAACCGGAGAATATAAG TATGATCAGGATATGAGTACGCAATATGATCATAAGCAGGATATTCTGGCTGCTTATTTGGGCTATCAGCTGAAGTACAA AAAACTCGGTGGAAAGGCGGGAATTCGCTATGAGCATACATTTATGGATGCGGATTATAAAAATAAGGATGAGAAGTTTG ATGCTCAGTTTGATGATTTGGTTCCATCCTTGATGTTCTCTTACCAATTGGCTCCTACTCAAAGTTTGAGGGCATCTTAT AATATGCGTATCAGCCGGCCGGGTATTTGGTTTTTGAATCCGTTTACTGACACCAGCAACCCTACTGCGATCAGTTACGG TAATCCTGATTTGGAAAGTGAAAAGGCCCATTCGCTTAGTGTTACTTTCGGTAGTTTCTCGCAGAAATTTAATGTAAATG TCAGTGCTAATTATTCTTTTGTCAATAATGGTATAGAGCAATACTCTTTTATAAAAGATGGTGTGATGAATTCTACCTAT GATAATATAGGAAAAAGTAAGAATATTAATTTGTCTTTGTTCTTGAACTGGAATATGTCTCCTAAAACCCGCTTTAATAT CAATGGACGGGGAGCTTATGTGGATTATAGAAGTTCAGGGCTTGATTTAAAGAATCATGGCTGGGAAGGAAATGTCTTCG GAAGCTTCCAGCAGACTCTGCCTTGGGATCTGCGTCTGAGTCTGAACGGAGGGGGTGGTACTCCGCATATCTCTTTGCAA GGTAAAAGTTCCTCTTTCTATTATTATGCGATAGGGCTCAGTCGTTCTTTCTTGAAGGAAAAGAGGCTGACTATATCTCT TAACTCGTCCAATTTATTTAATAAATATATTACTTTTAAGAATAACATCAATACTCCTACTTTCTGCTCTTCTACTGCTA CCAGAATTCCGATGCGTTATTATGGATTTAATATCAGTTGGCGTTTTGGGGAGTTGAAGGCTCAGGTAAAAAAAGCTGCG CGAAGCATTAATAATGATGATTTGAAAAGTGGAGGAGGTAATGCTGGAACCGGTGGAGGGATACCGGCTAATTAA
Upstream 100 bases:
>100_bases CTCGCTGGTAGATAATATATAGGCTTCTTTAACGTCTGAAAATAAACTACTTGCTATCGTTTACCTACCTTTGCAACAAA CACAAACTCATTATTGATAT
Downstream 100 bases:
>100_bases AAGTTAAAACGAAACCACCTGTTAACTGTTAATTTAGGGGGTAAAAACTGTTATTTGATAGTTTATACCCCCTTTGTTGT TAGTTTTTCTGTCGTGACTT
Product: putative TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; NB-Dependent Receptor Exported Protein; NB Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein; NB Dependent/Ligand-Gated Channel; Outer Membrane Receptor Family Transporter; Nb-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Ferrienterochelin And Colicin; Protein Containing nB-Dependent Receptor Plug Domain
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MKHNILWGIILLVASLSFTAKAQKAVQGQFSVKGVLLDSLSNEGEPYSTIRISLKNNPAKPVKLAVTGADGRFDERLAVP GIYLIHFTSVGKSPVQKEFSISANRRNVDLGKILIAEATEMLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEML RKVPLVTVDGEDKIQVNGSSKFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITVGAG MEGYTVTLNGGASNMRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQENKFLESHRRSKSYGNFQFGSL EGSYEIDTLNLISFSMNLMTGNFTNKRIGNTQMTNHAGNPVYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRF SHSPNNSEANTDYEDTLNVPYLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK YDQDMSTQYDHKQDILAAYLGYQLKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDLVPSLMFSYQLAPTQSLRASY NMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLSVTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTY DNIGKSKNINLSLFLNWNMSPKTRFNINGRGAYVDYRSSGLDLKNHGWEGNVFGSFQQTLPWDLRLSLNGGGGTPHISLQ GKSSSFYYYAIGLSRSFLKEKRLTISLNSSNLFNKYITFKNNINTPTFCSSTATRIPMRYYGFNISWRFGELKAQVKKAA RSINNDDLKSGGGNAGTGGGIPAN
Sequences:
>Translated_824_residues MKHNILWGIILLVASLSFTAKAQKAVQGQFSVKGVLLDSLSNEGEPYSTIRISLKNNPAKPVKLAVTGADGRFDERLAVP GIYLIHFTSVGKSPVQKEFSISANRRNVDLGKILIAEATEMLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEML RKVPLVTVDGEDKIQVNGSSKFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITVGAG MEGYTVTLNGGASNMRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQENKFLESHRRSKSYGNFQFGSL EGSYEIDTLNLISFSMNLMTGNFTNKRIGNTQMTNHAGNPVYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRF SHSPNNSEANTDYEDTLNVPYLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK YDQDMSTQYDHKQDILAAYLGYQLKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDLVPSLMFSYQLAPTQSLRASY NMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLSVTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTY DNIGKSKNINLSLFLNWNMSPKTRFNINGRGAYVDYRSSGLDLKNHGWEGNVFGSFQQTLPWDLRLSLNGGGGTPHISLQ GKSSSFYYYAIGLSRSFLKEKRLTISLNSSNLFNKYITFKNNINTPTFCSSTATRIPMRYYGFNISWRFGELKAQVKKAA RSINNDDLKSGGGNAGTGGGIPAN >Mature_824_residues MKHNILWGIILLVASLSFTAKAQKAVQGQFSVKGVLLDSLSNEGEPYSTIRISLKNNPAKPVKLAVTGADGRFDERLAVP GIYLIHFTSVGKSPVQKEFSISANRRNVDLGKILIAEATEMLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEML RKVPLVTVDGEDKIQVNGSSKFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITVGAG MEGYTVTLNGGASNMRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQENKFLESHRRSKSYGNFQFGSL EGSYEIDTLNLISFSMNLMTGNFTNKRIGNTQMTNHAGNPVYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRF SHSPNNSEANTDYEDTLNVPYLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK YDQDMSTQYDHKQDILAAYLGYQLKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDLVPSLMFSYQLAPTQSLRASY NMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLSVTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTY DNIGKSKNINLSLFLNWNMSPKTRFNINGRGAYVDYRSSGLDLKNHGWEGNVFGSFQQTLPWDLRLSLNGGGGTPHISLQ GKSSSFYYYAIGLSRSFLKEKRLTISLNSSNLFNKYITFKNNINTPTFCSSTATRIPMRYYGFNISWRFGELKAQVKKAA RSINNDDLKSGGGNAGTGGGIPAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91593; Mature: 91593
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHNILWGIILLVASLSFTAKAQKAVQGQFSVKGVLLDSLSNEGEPYSTIRISLKNNPAK CCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEHHCCCCCCEEEEEEEECCCCCC PVKLAVTGADGRFDERLAVPGIYLIHFTSVGKSPVQKEFSISANRRNVDLGKILIAEATE CEEEEEECCCCCCCCEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHH MLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEMLRKVPLVTVDGEDKIQVNGSS HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCEEEECCCCEEEECCCC KFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITVGAG EEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHEECCC MEGYTVTLNGGASNMRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQEN CCCEEEEEECCCCCEEEEECCCCEECCCEEEEEECEEECCCCCCCCCCHHHHHHHCHHHH KFLESHRRSKSYGNFQFGSLEGSYEIDTLNLISFSMNLMTGNFTNKRIGNTQMTNHAGNP HHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC VYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRFSHSPNNSEANTDYEDTLNVP EEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHCCCCC YLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK EEECCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE YDQDMSTQYDHKQDILAAYLGYQLKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDL CCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH VPSLMFSYQLAPTQSLRASYNMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLS HHHHHHEEECCCCHHHHCCCCEEECCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCEEE VTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTYDNIGKSKNINLSLFLNWNMS EEECCCCEEEEEEEEECCHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEEECCC PKTRFNINGRGAYVDYRSSGLDLKNHGWEGNVFGSFQQTLPWDLRLSLNGGGGTPHISLQ CCEEEEECCCEEEEEECCCCCCCCCCCCCCCEECCHHHCCCEEEEEEEECCCCCCEEEEE GKSSSFYYYAIGLSRSFLKEKRLTISLNSSNLFNKYITFKNNINTPTFCSSTATRIPMRY CCCCCEEEEEEECCHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHCCEEEE YGFNISWRFGELKAQVKKAARSINNDDLKSGGGNAGTGGGIPAN EEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKHNILWGIILLVASLSFTAKAQKAVQGQFSVKGVLLDSLSNEGEPYSTIRISLKNNPAK CCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEHHCCCCCCEEEEEEEECCCCCC PVKLAVTGADGRFDERLAVPGIYLIHFTSVGKSPVQKEFSISANRRNVDLGKILIAEATE CEEEEEECCCCCCCCEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHH MLKGVEVVAQKPLVKAEIDKVTYSIEDDPDSKTNTTLEMLRKVPLVTVDGEDKIQVNGSS HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCEEEECCCCEEEECCCC KFKVHVNGKPNNMMSNNPTEVLRSMPANSIKSIEVITEPGAKYDAEGVAGILNIITVGAG EEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHEECCC MEGYTVTLNGGASNMRVYGGGYGTVQSGKFTVTGNYSYNYQGSQKGFEDSYREDFTSQEN CCCEEEEEECCCCCEEEEECCCCEECCCEEEEEECEEECCCCCCCCCCHHHHHHHCHHHH KFLESHRRSKSYGNFQFGSLEGSYEIDTLNLISFSMNLMTGNFTNKRIGNTQMTNHAGNP HHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCC VYGYGSLGNNESGFGEVGGNMDYQHSFKKKGELLTFSYRFSHSPNNSEANTDYEDTLNVP EEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHCCCCC YLLQNQYFKNDASTQEHTAQLDYTNPINSIHSIETGIKYIFRRSKSDGKYYLADKTGEYK EEECCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE YDQDMSTQYDHKQDILAAYLGYQLKYKKLGGKAGIRYEHTFMDADYKNKDEKFDAQFDDL CCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH VPSLMFSYQLAPTQSLRASYNMRISRPGIWFLNPFTDTSNPTAISYGNPDLESEKAHSLS HHHHHHEEECCCCHHHHCCCCEEECCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCEEE VTFGSFSQKFNVNVSANYSFVNNGIEQYSFIKDGVMNSTYDNIGKSKNINLSLFLNWNMS EEECCCCEEEEEEEEECCHHHHCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEEECCC PKTRFNINGRGAYVDYRSSGLDLKNHGWEGNVFGSFQQTLPWDLRLSLNGGGGTPHISLQ CCEEEEECCCEEEEEECCCCCCCCCCCCCCCEECCHHHCCCEEEEEEEECCCCCCEEEEE GKSSSFYYYAIGLSRSFLKEKRLTISLNSSNLFNKYITFKNNINTPTFCSSTATRIPMRY CCCCCEEEEEEECCHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHCCEEEE YGFNISWRFGELKAQVKKAARSINNDDLKSGGGNAGTGGGIPAN EEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA