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The map label for this gene is csd [H]

Identifier: 150003927

GI number: 150003927

Start: 1812842

End: 1814056

Strand: Direct

Name: csd [H]

Synonym: BVU_1360

Alternate gene names: 150003927

Gene position: 1812842-1814056 (Clockwise)

Preceding gene: 150003926

Following gene: 150003929

Centisome position: 35.11

GC content: 46.83

Gene sequence:

>1215_bases
ATGTACGATATACAAAAAATAAGAGAAGATTTTCCGATATTAGATCGGGAGGTGTATGGAAAGCCGCTTATTTATCTGGA
TAATGGGGCTACCACTCAGAAACCGCGCCAAGTGGTTGAAGCCATAACCGATGAATATTATTCGGTCAATGCCAATGTGC
ATCGTGGTGTGCATTTCCTGTCTCAGCAGGCTACCGAGTTGCATGAAGCTTCTCGTGAGACTGTACGTCGTTTTATCAAT
GCACGCAGTAGCAATGAAATCGTGTTTACACGGGGCACGACGGAGAGTATCAACCTGTTGGCTTCTTCTTTTGCCGACAG
TCAGATGAAGGAAGGTGATGAAGTGATTGTTTCTGTCATGGAGCATCACAGCAATATTGTACCTTGGCAGTTACAGGCTG
CGCGTAAAGGAATCGTGCTGAAAGTGATTCCCATGAATGACAGGGGAGAACTGTTGTTGGATGAATATGAGAAACTCTTT
TCGGAACGGACCAAGCTGGTGAGTTTCGCTCATGTAAGTAATGTGTTGGGCACTGTCAATCCGGCGAAAGAGATGATTGC
GACTGCCCATGCACACGGTGTTCCCGTTTTGATTGACGGGGCGCAGAGTGTTCCTCACATGAAAGTGGATGTTCAGGATT
TGGATGCCGACTTTTTTGCTTTCAGCGGACATAAGATATATGGTCCTACCGGTGTGGGGGTGCTTTATGGAAAGGAAGAG
TGGCTGGATAAGCTTCCACCTTACCAGGGGGGAGGCGAGATGATACAAAGTGTCAGCTTCGAGAAAACGACTTTTAATGA
ATTGCCGTTTAAGTTTGAAGCGGGAACTCCCGATTATATCGGCACTACCGCCTTGGCAAAAGCGTTGGATTATGTATCTG
CCATTGGTATGGAGAACATTGCCGCCCATGAGCATGAACTGACCCTATATGCCATGCAGCGTCTGAAAGAAATAAACGGA
ATGCGTATCTTCGGAGAGGCTGAGCATAAGAGCAGTGTCATTTCTTTCTTGGTAGGAAATATTCATCATTTGGATATGGG
TACGTTGCTTGACCGTCTGGGCATTGCCGTACGTACCGGGCATCATTGTGCTCAGCCTTTGATGATTCGTATGGGGATTG
AAGGAACCGTGCGTGCTTCTTTCGGTTTGTATAATACCAAGGAGGAGATAGATATGCTGGCTGCCGGCATTGAGCGCGTC
AGCAGGATGTTTTGA

Upstream 100 bases:

>100_bases
CCTGGATGCATTGAAAGACCGTTTGCATCTGTTGGTGGAAAAACGTTTCCGTGGTGAGTTGAATAAATGTCAGGGATGTG
CGATATGTAAATAAGACGCC

Downstream 100 bases:

>100_bases
TTTCTCCAAACGAAATAAGTCGGAGGTGTGTCGTAATGCACGATGCACCTCTTTTTTTGTTCATCACTATACAAATCTGT
TCACTTTCTTTAAGCTGCGA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MYDIQKIREDFPILDREVYGKPLIYLDNGATTQKPRQVVEAITDEYYSVNANVHRGVHFLSQQATELHEASRETVRRFIN
ARSSNEIVFTRGTTESINLLASSFADSQMKEGDEVIVSVMEHHSNIVPWQLQAARKGIVLKVIPMNDRGELLLDEYEKLF
SERTKLVSFAHVSNVLGTVNPAKEMIATAHAHGVPVLIDGAQSVPHMKVDVQDLDADFFAFSGHKIYGPTGVGVLYGKEE
WLDKLPPYQGGGEMIQSVSFEKTTFNELPFKFEAGTPDYIGTTALAKALDYVSAIGMENIAAHEHELTLYAMQRLKEING
MRIFGEAEHKSSVISFLVGNIHHLDMGTLLDRLGIAVRTGHHCAQPLMIRMGIEGTVRASFGLYNTKEEIDMLAAGIERV
SRMF

Sequences:

>Translated_404_residues
MYDIQKIREDFPILDREVYGKPLIYLDNGATTQKPRQVVEAITDEYYSVNANVHRGVHFLSQQATELHEASRETVRRFIN
ARSSNEIVFTRGTTESINLLASSFADSQMKEGDEVIVSVMEHHSNIVPWQLQAARKGIVLKVIPMNDRGELLLDEYEKLF
SERTKLVSFAHVSNVLGTVNPAKEMIATAHAHGVPVLIDGAQSVPHMKVDVQDLDADFFAFSGHKIYGPTGVGVLYGKEE
WLDKLPPYQGGGEMIQSVSFEKTTFNELPFKFEAGTPDYIGTTALAKALDYVSAIGMENIAAHEHELTLYAMQRLKEING
MRIFGEAEHKSSVISFLVGNIHHLDMGTLLDRLGIAVRTGHHCAQPLMIRMGIEGTVRASFGLYNTKEEIDMLAAGIERV
SRMF
>Mature_404_residues
MYDIQKIREDFPILDREVYGKPLIYLDNGATTQKPRQVVEAITDEYYSVNANVHRGVHFLSQQATELHEASRETVRRFIN
ARSSNEIVFTRGTTESINLLASSFADSQMKEGDEVIVSVMEHHSNIVPWQLQAARKGIVLKVIPMNDRGELLLDEYEKLF
SERTKLVSFAHVSNVLGTVNPAKEMIATAHAHGVPVLIDGAQSVPHMKVDVQDLDADFFAFSGHKIYGPTGVGVLYGKEE
WLDKLPPYQGGGEMIQSVSFEKTTFNELPFKFEAGTPDYIGTTALAKALDYVSAIGMENIAAHEHELTLYAMQRLKEING
MRIFGEAEHKSSVISFLVGNIHHLDMGTLLDRLGIAVRTGHHCAQPLMIRMGIEGTVRASFGLYNTKEEIDMLAAGIERV
SRMF

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=232, Percent_Identity=30.1724137931034, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI156713448, Length=418, Percent_Identity=25.8373205741627, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI1787970, Length=405, Percent_Identity=51.6049382716049, Blast_Score=440, Evalue=1e-124,
Organism=Escherichia coli, GI1789175, Length=400, Percent_Identity=41.75, Blast_Score=327, Evalue=7e-91,
Organism=Escherichia coli, GI48994898, Length=216, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI193211090, Length=396, Percent_Identity=26.5151515151515, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI25143064, Length=213, Percent_Identity=30.0469483568075, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319831, Length=238, Percent_Identity=30.672268907563, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI20129463, Length=242, Percent_Identity=31.404958677686, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45096; Mature: 45096

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDIQKIREDFPILDREVYGKPLIYLDNGATTQKPRQVVEAITDEYYSVNANVHRGVHFL
CCCHHHHHHHCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHH
SQQATELHEASRETVRRFINARSSNEIVFTRGTTESINLLASSFADSQMKEGDEVIVSVM
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
EHHSNIVPWQLQAARKGIVLKVIPMNDRGELLLDEYEKLFSERTKLVSFAHVSNVLGTVN
HHCCCCCCEEHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAKEMIATAHAHGVPVLIDGAQSVPHMKVDVQDLDADFFAFSGHKIYGPTGVGVLYGKEE
HHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHCCCCEEEECCCEEECCCCCEEEECCHH
WLDKLPPYQGGGEMIQSVSFEKTTFNELPFKFEAGTPDYIGTTALAKALDYVSAIGMENI
HHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHH
AAHEHELTLYAMQRLKEINGMRIFGEAEHKSSVISFLVGNIHHLDMGTLLDRLGIAVRTG
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHCHHEECC
HHCAQPLMIRMGIEGTVRASFGLYNTKEEIDMLAAGIERVSRMF
CHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYDIQKIREDFPILDREVYGKPLIYLDNGATTQKPRQVVEAITDEYYSVNANVHRGVHFL
CCCHHHHHHHCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHH
SQQATELHEASRETVRRFINARSSNEIVFTRGTTESINLLASSFADSQMKEGDEVIVSVM
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
EHHSNIVPWQLQAARKGIVLKVIPMNDRGELLLDEYEKLFSERTKLVSFAHVSNVLGTVN
HHCCCCCCEEHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAKEMIATAHAHGVPVLIDGAQSVPHMKVDVQDLDADFFAFSGHKIYGPTGVGVLYGKEE
HHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHCCCCEEEECCCEEECCCCCEEEECCHH
WLDKLPPYQGGGEMIQSVSFEKTTFNELPFKFEAGTPDYIGTTALAKALDYVSAIGMENI
HHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHH
AAHEHELTLYAMQRLKEINGMRIFGEAEHKSSVISFLVGNIHHLDMGTLLDRLGIAVRTG
HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHCHHEECC
HHCAQPLMIRMGIEGTVRASFGLYNTKEEIDMLAAGIERVSRMF
CHHCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]