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The map label for this gene is xerD [H]

Identifier: 150003451

GI number: 150003451

Start: 1179994

End: 1180935

Strand: Direct

Name: xerD [H]

Synonym: BVU_0878

Alternate gene names: 150003451

Gene position: 1179994-1180935 (Clockwise)

Preceding gene: 150003445

Following gene: 150003452

Centisome position: 22.85

GC content: 44.06

Gene sequence:

>942_bases
ATGAAAAGAACCGAGAAAACAGACAAGATATTGGTGAAATACAAACAATATTTAAAGTTGGAGAAATCGTTATCTGACAA
TACGGTAGATGCTTATCTTACTGACCTGGACAAGTTACTGGCTTATCTTACATTAGAAAACATCAACATTCTGGATGTCC
GGCTTGAAAATCTGGAAGATTTCTCGGCCGGATTACATGATATCGGCATCCACCCCCGTTCGCAGGCACGCATCTTGTCG
GGCATCCGCTCTTTCTACCGTTTCCTCATTATGGAAGATTACCTGAAAGCCGACCCGACAGAATTGCTGGAATCCCCCCA
GACAGGTTTCAAACTGCCCGAAGTAATGACTGTAGAAGAGATAGACCTGCTGATAGGAAGCATAGACCGCAGCACCAAAG
AGGGACAGCGCAACAGGGCCATACTGGAAACGCTTTACAGTTGCGGGCTCCGCGTTTCCGAACTCTGCAACCTGAAATTA
TCCGAACTTTATTTTGAAGAAGGCTTCATCAAAGTGGAAGGAAAAGGAAGCAAACAGCGGCTGGTTCCTATTTCACCGCG
CGCCATCAAGGAAATCAGGCTCTACTTCACCGACCGTAACCTGATGAAAATAAAGCCGGGATTTGAAGACTTTGTCTTTA
TCAGCAATTTCGGGAAGAACATCTCCCGCATCATGGTTTTCCATATCATCAAAGAACTGGCAGCCCGGATAGGTCTGAAA
AAAAAAATCAGTCCTCACACTTTCCGCCATTCTTTTGCAACACATTTGCTGGAAGGAGGCGCCAACTTGCGTGCCATACA
GTGTATGCTGGGACATGAAAGTATCGGGACAACAGAAATTTATACACATATAGACCGTAATATGCTACGCAGTGAAATCA
TAGAACATCACCCCCGTAACATCAAATTCAGAGAAAAAGATAATAAAGGTTCTATATTCTAA

Upstream 100 bases:

>100_bases
TGATATTAGGTCCATTAATAATTTGTATTTTCATATTTATACTATATCTGAACTTTTTCTACCTTTGCAGGGAATTTGGG
TACAAAGGTAGAAAAAAGAA

Downstream 100 bases:

>100_bases
AATATTTTAAGATAAATTGAAAAAAAAGCAGGCTAAGAAGCTAGCATATAATAGAGTTTTTCCTATCTTTGTCCCCAAAG
AGACGCACAAAAACGTACTA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKRTEKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHDIGIHPRSQARILS
GIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKL
SELYFEEGFIKVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK
KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIKFREKDNKGSIF

Sequences:

>Translated_313_residues
MKRTEKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHDIGIHPRSQARILS
GIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKL
SELYFEEGFIKVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK
KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIKFREKDNKGSIF
>Mature_313_residues
MKRTEKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHDIGIHPRSQARILS
GIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKL
SELYFEEGFIKVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK
KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIKFREKDNKGSIF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=285, Percent_Identity=35.4385964912281, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=35.1724137931034, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1790767, Length=171, Percent_Identity=28.6549707602339, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790768, Length=168, Percent_Identity=27.9761904761905, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36179; Mature: 36179

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTEKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEE
HHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHH
IDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR
HHHHHHHHCCCHHCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCEEEEECCCCCCC
LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK
EECCCHHHHHHHHEEEECCCEEEECCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC
KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRN
CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
IKFREKDNKGSIF
CEEEECCCCCCCC
>Mature Secondary Structure
MKRTEKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLED
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
FSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEE
HHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHH
IDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQR
HHHHHHHHCCCHHCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCEEEEECCCCCCC
LVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLK
EECCCHHHHHHHHEEEECCCEEEECCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC
KKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRN
CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
IKFREKDNKGSIF
CEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA