Click here to switch to the map view.

The map label for this gene is hifE [H]

Identifier: 148828400

GI number: 148828400

Start: 1851830

End: 1853143

Strand: Direct

Name: hifE [H]

Synonym: CGSHiGG_10045

Alternate gene names: 148828400

Gene position: 1851830-1853143 (Clockwise)

Preceding gene: 148828399

Following gene: 148828401

Centisome position: 98.13

GC content: 34.02

Gene sequence:

>1314_bases
ATGAATAAGAAATCGTATATAAATCATTATTTAACTTTATTTAAAGTTACTACTTTACTATTTACTCTTTCAAGTAATCC
CGTTTGGGCAAATATAAAAACAGCTCAGGCAGCAACTGGTGGTTCTTCACCTCCAACAAGAACTTTCACATTTAGTGGCG
ATACGCAAATGAAAGTAGTTTCTTCACAACCAACTCAAATTGTTTTCTCTAAAGCAAGAGATAATATTGATACAACACAT
ATTCAATCTTCTGAAACGGGTGCTTCAGCAAATTCATTAGCTCCATTTAATGATTGGATTTATGGGTCATCAGTAGAGAC
AGGTTATAGCTTTGAGGGCTTTACTTGTGTTAGTCAAACTTGCCCACAAATGCAATTACCATTATTACTTCATCCTGATC
CTTCTTTAATTCCAACTGGAATGAAAAATGATGCTGGAGGGGATATTTTTAAATTACTTAATCAACCTAATTTAGGCATT
TCTTTTCAAATTGGAGTAAAAACGAACGGTATTCTAGAATGGGTTAGTGCTAATAGTAATGTTAGGTTTCTAAAAAATTT
AATGGTGCATTTTAATTCTAGTGTTAAAACATTTTTCGATTTACGTGCTAAATTGCATTTATTAACAGATTTTTCATCGC
TAAGGAATGATGAAATTACTATTGAATCTATGGATGTTAGAATAGGCGAAATTAAACTTGATATGTGGCGTGGTCAACCA
GGAGGCTTTTTTGGTACTAAATATGTAGTTCAGGATACGGGAAAAATATCTATTTTCTTTAAAACACCTAAAATTATTCT
AAAAAAACAACAACGTCAATGTACTTTAAATGCTAGCCCCGAAAATATAAATGTTTCTTTAATGGGCGTAAAAAAACGTG
AATTGGAGGAACGAAATGAAATGGAAGGTGGGAAATTTAAGTTAAGAGTAAATTGTAACCATACCACTTATAATAAAGCC
AACGGCAAATGGTTATTTCCTGTAGTGAAAGTTACTTTTACGGGCGAAGATGGTACAACGAATAATGGAAATAGTGAGTT
ACTTCACACCAAAACAGGCGACGGACAAGCCGAAGGCGTTAGCTTAAGAATCAAACGAGAAAATAGCACAGATACTGTAA
AATATGGTTTAGATTCAGCTCAAATGAATAATCCTGGACAATTTGAATTACAAAAACAACCATCCCCTGCTGGTGGAGAT
CAATATGCTGAAGAAACTTTCAAAGTCTATTACGTAAAAGACCCAACAAGAGGAGGCGCCTTAACCGAAGGAAAAGTCAA
AGCCGCCGCCACTTTCAGAATGTCATATCAATAA

Upstream 100 bases:

>100_bases
GTTATTACGCCACAGGTGCAGCCACCGCAGGCGACGTTGAAGCCACTGCAACTTTTGAAGTGCAGTATAACTAAAATATT
TATTATCCAGTGATGAAAAA

Downstream 100 bases:

>100_bases
TAATGTAGGGCGGAATATAAAGGCGGTGCTTTAAAATAGATCGTAGGGTGGGCTTTAGCCCACCGTTTTTATTCATTTAG
CCATAACAAAGGTGGGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTAQAATGGSSPPTRTFTFSGDTQMKVVSSQPTQIVFSKARDNIDTTH
IQSSETGASANSLAPFNDWIYGSSVETGYSFEGFTCVSQTCPQMQLPLLLHPDPSLIPTGMKNDAGGDIFKLLNQPNLGI
SFQIGVKTNGILEWVSANSNVRFLKNLMVHFNSSVKTFFDLRAKLHLLTDFSSLRNDEITIESMDVRIGEIKLDMWRGQP
GGFFGTKYVVQDTGKISIFFKTPKIILKKQQRQCTLNASPENINVSLMGVKKRELEERNEMEGGKFKLRVNCNHTTYNKA
NGKWLFPVVKVTFTGEDGTTNNGNSELLHTKTGDGQAEGVSLRIKRENSTDTVKYGLDSAQMNNPGQFELQKQPSPAGGD
QYAEETFKVYYVKDPTRGGALTEGKVKAAATFRMSYQ

Sequences:

>Translated_437_residues
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTAQAATGGSSPPTRTFTFSGDTQMKVVSSQPTQIVFSKARDNIDTTH
IQSSETGASANSLAPFNDWIYGSSVETGYSFEGFTCVSQTCPQMQLPLLLHPDPSLIPTGMKNDAGGDIFKLLNQPNLGI
SFQIGVKTNGILEWVSANSNVRFLKNLMVHFNSSVKTFFDLRAKLHLLTDFSSLRNDEITIESMDVRIGEIKLDMWRGQP
GGFFGTKYVVQDTGKISIFFKTPKIILKKQQRQCTLNASPENINVSLMGVKKRELEERNEMEGGKFKLRVNCNHTTYNKA
NGKWLFPVVKVTFTGEDGTTNNGNSELLHTKTGDGQAEGVSLRIKRENSTDTVKYGLDSAQMNNPGQFELQKQPSPAGGD
QYAEETFKVYYVKDPTRGGALTEGKVKAAATFRMSYQ
>Mature_437_residues
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTAQAATGGSSPPTRTFTFSGDTQMKVVSSQPTQIVFSKARDNIDTTH
IQSSETGASANSLAPFNDWIYGSSVETGYSFEGFTCVSQTCPQMQLPLLLHPDPSLIPTGMKNDAGGDIFKLLNQPNLGI
SFQIGVKTNGILEWVSANSNVRFLKNLMVHFNSSVKTFFDLRAKLHLLTDFSSLRNDEITIESMDVRIGEIKLDMWRGQP
GGFFGTKYVVQDTGKISIFFKTPKIILKKQQRQCTLNASPENINVSLMGVKKRELEERNEMEGGKFKLRVNCNHTTYNKA
NGKWLFPVVKVTFTGEDGTTNNGNSELLHTKTGDGQAEGVSLRIKRENSTDTVKYGLDSAQMNNPGQFELQKQPSPAGGD
QYAEETFKVYYVKDPTRGGALTEGKVKAAATFRMSYQ

Specific function: May be a minor structural protein required for pilus biogenesis. May be the adhesive component in the pili [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- InterPro:   IPR008707 [H]

Pfam domain/function: PF00419 Fimbrial; PF05567 Neisseria_PilC [H]

EC number: NA

Molecular weight: Translated: 48478; Mature: 48478

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTAQAATGGSSPPTRTFTFSGDTQMKVV
CCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEE
SSQPTQIVFSKARDNIDTTHIQSSETGASANSLAPFNDWIYGSSVETGYSFEGFTCVSQT
CCCCCEEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEHHHC
CPQMQLPLLLHPDPSLIPTGMKNDAGGDIFKLLNQPNLGISFQIGVKTNGILEWVSANSN
CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCC
VRFLKNLMVHFNSSVKTFFDLRAKLHLLTDFSSLRNDEITIESMDVRIGEIKLDMWRGQP
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECHHHHCCCEEEEEEEEEEEEEEEEEEECCCC
GGFFGTKYVVQDTGKISIFFKTPKIILKKQQRQCTLNASPENINVSLMGVKKRELEERNE
CCCCCEEEEEECCCEEEEEEECCHHHHCCCCCEEEECCCCCCEEEEEEECHHHHHHHHHC
MEGGKFKLRVNCNHTTYNKANGKWLFPVVKVTFTGEDGTTNNGNSELLHTKTGDGQAEGV
CCCCEEEEEEECCCCEECCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCE
SLRIKRENSTDTVKYGLDSAQMNNPGQFELQKQPSPAGGDQYAEETFKVYYVKDPTRGGA
EEEEEECCCCCEEEECCCHHCCCCCCCEEEECCCCCCCCCHHCCCEEEEEEEECCCCCCC
LTEGKVKAAATFRMSYQ
CCCCCEEEEEEEEEECC
>Mature Secondary Structure
MNKKSYINHYLTLFKVTTLLFTLSSNPVWANIKTAQAATGGSSPPTRTFTFSGDTQMKVV
CCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEE
SSQPTQIVFSKARDNIDTTHIQSSETGASANSLAPFNDWIYGSSVETGYSFEGFTCVSQT
CCCCCEEEEEHHCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEHHHC
CPQMQLPLLLHPDPSLIPTGMKNDAGGDIFKLLNQPNLGISFQIGVKTNGILEWVSANSN
CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCC
VRFLKNLMVHFNSSVKTFFDLRAKLHLLTDFSSLRNDEITIESMDVRIGEIKLDMWRGQP
HHHHHHHHHHHCCCHHHHHHHHHEEEEEECHHHHCCCEEEEEEEEEEEEEEEEEEECCCC
GGFFGTKYVVQDTGKISIFFKTPKIILKKQQRQCTLNASPENINVSLMGVKKRELEERNE
CCCCCEEEEEECCCEEEEEEECCHHHHCCCCCEEEECCCCCCEEEEEEECHHHHHHHHHC
MEGGKFKLRVNCNHTTYNKANGKWLFPVVKVTFTGEDGTTNNGNSELLHTKTGDGQAEGV
CCCCEEEEEEECCCCEECCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCE
SLRIKRENSTDTVKYGLDSAQMNNPGQFELQKQPSPAGGDQYAEETFKVYYVKDPTRGGA
EEEEEECCCCCEEEECCCHHCCCCCCCEEEECCCCCCCCCHHCCCEEEEEEEECCCCCCC
LTEGKVKAAATFRMSYQ
CCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA