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The map label for this gene is hifD [H]

Identifier: 148828399

GI number: 148828399

Start: 1851141

End: 1851803

Strand: Direct

Name: hifD [H]

Synonym: CGSHiGG_10040

Alternate gene names: 148828399

Gene position: 1851141-1851803 (Clockwise)

Preceding gene: 148828398

Following gene: 148828400

Centisome position: 98.09

GC content: 46.0

Gene sequence:

>663_bases
ATGCAAAAAACACCCAAAAAATTAACCGCACTTTTCCATCAAAAATCCACCGCTACTTGTAGTGGAGAAAATTATAGTGG
AGCAAATTATAGTGGCTCAAAATGCTTTAGGCTTCATCGTCTGGCACTGCTTGCTTGCGTGGCTCTGCTTGATTGCATTG
TGGCACTGCCTGCTTATGCTTACGATGGCAAAGTGACCTTTCAAGGGGAGATTTTAAGTGATGGCACTTGTAAAATTGAA
ACAGACAGCCAAAATCGCACGGTTACCCTGCCAACAGTGGGGAAAGCTAATTTAAGCAGTGCAGGGCAAACAGCTGCGCC
CGTGCCTTTTTCCATCAGGTTAAAAGATTGCAATGCAGATGATGCTATAAAAGCTAATCTGCTATTTAAAGGTGGAACAG
TAGGGAATTATCTTTCCAATAAGACAGGCGACGGCAAAGCCACCAACGTGGGCATTCAAATTGTCAAAGCCGATGGCACA
GGCACGCCTATCAAGGTGGATGGCAGCGAAGCCAACAGAGAAAAAGCCCCCGACACAGGCAAAGAGAAAAACGGCACGGT
TATTCAACCCCGTTTTGACTACTTTGCACGTTATTACGCCACAGGTGCAGCCACCGCAGGCGACGTTGAAGCCACTGCAA
CTTTTGAAGTGCAGTATAACTAA

Upstream 100 bases:

>100_bases
AGCGAACAATGCCGTTTCCAATATCAAGTTGATTTGGATAACGCACAAATACAAAGCCACGATATTCAATGTAAAACAGC
AGAATAATTGAAGAGGATTT

Downstream 100 bases:

>100_bases
AATATTTATTATCCAGTGATGAAAAAATGAATAAGAAATCGTATATAAATCATTATTTAACTTTATTTAAAGTTACTACT
TTACTATTTACTCTTTCAAG

Product: S-fimbrial protein subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQKTPKKLTALFHQKSTATCSGENYSGANYSGSKCFRLHRLALLACVALLDCIVALPAYAYDGKVTFQGEILSDGTCKIE
TDSQNRTVTLPTVGKANLSSAGQTAAPVPFSIRLKDCNADDAIKANLLFKGGTVGNYLSNKTGDGKATNVGIQIVKADGT
GTPIKVDGSEANREKAPDTGKEKNGTVIQPRFDYFARYYATGAATAGDVEATATFEVQYN

Sequences:

>Translated_220_residues
MQKTPKKLTALFHQKSTATCSGENYSGANYSGSKCFRLHRLALLACVALLDCIVALPAYAYDGKVTFQGEILSDGTCKIE
TDSQNRTVTLPTVGKANLSSAGQTAAPVPFSIRLKDCNADDAIKANLLFKGGTVGNYLSNKTGDGKATNVGIQIVKADGT
GTPIKVDGSEANREKAPDTGKEKNGTVIQPRFDYFARYYATGAATAGDVEATATFEVQYN
>Mature_220_residues
MQKTPKKLTALFHQKSTATCSGENYSGANYSGSKCFRLHRLALLACVALLDCIVALPAYAYDGKVTFQGEILSDGTCKIE
TDSQNRTVTLPTVGKANLSSAGQTAAPVPFSIRLKDCNADDAIKANLLFKGGTVGNYLSNKTGDGKATNVGIQIVKADGT
GTPIKVDGSEANREKAPDTGKEKNGTVIQPRFDYFARYYATGAATAGDVEATATFEVQYN

Specific function: May be a minor structural protein required for pilus biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable). Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790769, Length=162, Percent_Identity=38.8888888888889, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87082421, Length=189, Percent_Identity=29.1005291005291, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 23293; Mature: 23293

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTPKKLTALFHQKSTATCSGENYSGANYSGSKCFRLHRLALLACVALLDCIVALPAYA
CCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
YDGKVTFQGEILSDGTCKIETDSQNRTVTLPTVGKANLSSAGQTAAPVPFSIRLKDCNAD
CCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCC
DAIKANLLFKGGTVGNYLSNKTGDGKATNVGIQIVKADGTGTPIKVDGSEANREKAPDTG
CCEEEEEEEECCCCCHHHCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCC
KEKNGTVIQPRFDYFARYYATGAATAGDVEATATFEVQYN
CCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MQKTPKKLTALFHQKSTATCSGENYSGANYSGSKCFRLHRLALLACVALLDCIVALPAYA
CCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
YDGKVTFQGEILSDGTCKIETDSQNRTVTLPTVGKANLSSAGQTAAPVPFSIRLKDCNAD
CCCEEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCC
DAIKANLLFKGGTVGNYLSNKTGDGKATNVGIQIVKADGTGTPIKVDGSEANREKAPDTG
CCEEEEEEEECCCCCHHHCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCC
KEKNGTVIQPRFDYFARYYATGAATAGDVEATATFEVQYN
CCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7927773; 7997179 [H]