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The map label for this gene is hifA [H]

Identifier: 148828396

GI number: 148828396

Start: 1846712

End: 1847320

Strand: Reverse

Name: hifA [H]

Synonym: CGSHiGG_10025

Alternate gene names: 148828396

Gene position: 1847320-1846712 (Counterclockwise)

Preceding gene: 148828402

Following gene: 148828394

Centisome position: 97.89

GC content: 32.68

Gene sequence:

>609_bases
TTGGCATTTGCGGGAAATGTGCAGGCTCAACCTAATGCTGATACAAAAGGGACTGTTACTTTCTTTGGTAAGGTTGTTGA
GAATACTTGTAAAGTAAAAATGGAAAATAGAAATATGAGCGTAGTATTAAATGATGTGGGTAAAGCGCATTTATCTCAGA
AAGGTAATACTGCGATGCCAACGCCATTTACAATTACGTTGGGAAGCTGTAATGCTAATATCGCTAATTCTGGTAATAAA
CCTAAAGCAACTAAGGTTGGGGTTTATTTTTATTCTTGGAAGAATACGGATGATAAAAATGACTTTACATTAAAAAATAT
ACATCAGGATAATAATGATAAAGCGGATAACGTTAATATTCAGCTTTTTAAAGATAATGGTACAGATGCAATTGAAGTAG
TGGGTAAAGAAACCGAGGACTTCGTTCATAAAAATGATGCAAACAATCAAAGTGTTATAACTAAAAATCATATTTCAGGT
GCAACTGAATTAAATGGTAAAACTGGTGATATTGCTCTACATTATATAGCTAAATATTATTCAACAGGAAATGATGTTAC
TGCAGGTAAAGTACAATCCTCAGTTGATTTCCAAATTGCTTACGAATAA

Upstream 100 bases:

>100_bases
ATAAACGGTTTATATTAATCTTTTTGCCTTATTTATAAGACACAAACCTATTTATGGAGCAATTTATTATGAAAAAACAC
TTCTTGGTAGCTTAATTTTA

Downstream 100 bases:

>100_bases
TTCCTAATGTGACGCAATCTAAGCCCACGTGTTTGTTATATCCTGCCTGGGCTTACGCCCACCCTACAAATCTTTTTTAT
ATGTATCCACGTGAGCTAAA

Product: putative F17-like fimbrial subunit

Products: NA

Alternate protein names: Major pilin [H]

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAFAGNVQAQPNADTKGTVTFFGKVVENTCKVKMENRNMSVVLNDVGKAHLSQKGNTAMPTPFTITLGSCNANIANSGNK
PKATKVGVYFYSWKNTDDKNDFTLKNIHQDNNDKADNVNIQLFKDNGTDAIEVVGKETEDFVHKNDANNQSVITKNHISG
ATELNGKTGDIALHYIAKYYSTGNDVTAGKVQSSVDFQIAYE

Sequences:

>Translated_202_residues
MAFAGNVQAQPNADTKGTVTFFGKVVENTCKVKMENRNMSVVLNDVGKAHLSQKGNTAMPTPFTITLGSCNANIANSGNK
PKATKVGVYFYSWKNTDDKNDFTLKNIHQDNNDKADNVNIQLFKDNGTDAIEVVGKETEDFVHKNDANNQSVITKNHISG
ATELNGKTGDIALHYIAKYYSTGNDVTAGKVQSSVDFQIAYE
>Mature_201_residues
AFAGNVQAQPNADTKGTVTFFGKVVENTCKVKMENRNMSVVLNDVGKAHLSQKGNTAMPTPFTITLGSCNANIANSGNKP
KATKVGVYFYSWKNTDDKNDFTLKNIHQDNNDKADNVNIQLFKDNGTDAIEVVGKETEDFVHKNDANNQSVITKNHISGA
TELNGKTGDIALHYIAKYYSTGNDVTAGKVQSSVDFQIAYE

Specific function: Mediates adherence to oropharyngeal epithelial cells. Helps the airway colonization process [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 22004; Mature: 21872

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFAGNVQAQPNADTKGTVTFFGKVVENTCKVKMENRNMSVVLNDVGKAHLSQKGNTAMP
CCCCCCCCCCCCCCCCCEEEEEHHHHCCEEEEEECCCCEEEEEECCCHHHHCCCCCCCCC
TPFTITLGSCNANIANSGNKPKATKVGVYFYSWKNTDDKNDFTLKNIHQDNNDKADNVNI
CCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEE
QLFKDNGTDAIEVVGKETEDFVHKNDANNQSVITKNHISGATELNGKTGDIALHYIAKYY
EEEECCCCCEEEEECCCCHHHHHCCCCCCCEEEEECCCCCCEECCCCCCCCHHEEHHHHH
STGNDVTAGKVQSSVDFQIAYE
CCCCCEEECEECCCEEEEEEEC
>Mature Secondary Structure 
AFAGNVQAQPNADTKGTVTFFGKVVENTCKVKMENRNMSVVLNDVGKAHLSQKGNTAMP
CCCCCCCCCCCCCCCCEEEEEHHHHCCEEEEEECCCCEEEEEECCCHHHHCCCCCCCCC
TPFTITLGSCNANIANSGNKPKATKVGVYFYSWKNTDDKNDFTLKNIHQDNNDKADNVNI
CCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEE
QLFKDNGTDAIEVVGKETEDFVHKNDANNQSVITKNHISGATELNGKTGDIALHYIAKYY
EEEECCCCCEEEEECCCCHHHHHCCCCCCCEEEEECCCCCCEECCCCCCCCHHEEHHHHH
STGNDVTAGKVQSSVDFQIAYE
CCCCCEEECEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA