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The map label for this gene is oppD [H]

Identifier: 148828282

GI number: 148828282

Start: 1717122

End: 1718057

Strand: Reverse

Name: oppD [H]

Synonym: CGSHiGG_09270

Alternate gene names: 148828282

Gene position: 1718057-1717122 (Counterclockwise)

Preceding gene: 148828283

Following gene: 148828281

Centisome position: 91.04

GC content: 43.7

Gene sequence:

>936_bases
ATGACAGATTATCGTACTCAGCCGATTAATCAGAAAAATGCGGATTTTGTGGAACAAGTGGCTGACCGTATTGAAGAAAT
GCAACTGGAAGGCCGCAGCCTATGGCAAGATGCGAAACGCCGTTTTTTCCGCAACAAAGCGGCCGTTGTCAGTCTGATTA
TTTTGGCGTTTATTATTATATTTATCACCGTAGCGCCTTGGTTCTTCCCATTTACCTATGAAGATACCGATTGGAATATG
ATGAGCGCCGCACCAACAATGGAAGGCTATCACTTCTTCGGTACCGACGCATCGGGTCGAGATTTATTGGTACGCACTGC
TATCGGTGGACGGATTTCATTATTGGTCGGTATTGCTGGTGCTTTCATTTCCGTGACTATCGGCACAATTTATGGAGCGA
TTTCTGGCTATGTAGGCGGTAAAACAGATATGCTGATGATGCGCTTTTTAGAGATTCTCAGCTCATTTCCATTTATGTTT
TTCGTGATTTTGTTGGTGACTCTTTTTGGCCAAAACATTTTCTTAATTTTTATCGCTATCGGGGCCATTGCTTGGCTTGG
TCTTGCACGTATTGTACGCGGACAAACCCTCAGCCTAAAAAATAAAGAATTCGTCGAAGCCGCCATCGTTTGTGGCGTAC
CTCGTCGCCAAATCATTTTGAAACACATTATTCCGAATGTATTAGGCTTAGTGGCAGTTTATGCCTCGCTTGAAGTGCCT
GGGCTCATTCTATTTGAATCATTCTTAAGCTTCTTAGGATTAGGAACTCAAGAACCGATGAGTAGCTGGGGTGCACTCTT
AAGTGATGGTGCTGCACAAATGGAAGTGTCGCCTTGGTTATTAATTTTCCCGGCATTTTTCCTTTGCCTTACCCTATTTT
GTTTTAACTTTATCGGTGACGGGTTGCGTGATGCGCTCGATCCGAAAGATAGATAG

Upstream 100 bases:

>100_bases
CCTCACCATTTTAGTGGGGACATTAACCATTTTATTTAATGCGATTGTGGATATTTTATACGCCATCATCGATCCAAAAA
TTCGTTATTAAGGATAAGTT

Downstream 100 bases:

>100_bases
GAGCGAATAATGAATCCTTTATTAGATGTAAAAAATCTCTACGTTCGCTTCAAAACACCAGATGGCGTCGTCACAGCAGT
GAATGACTTAAACTTCACGC

Product: oligopeptide transporter ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTDYRTQPINQKNADFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVVSLIILAFIIIFITVAPWFFPFTYEDTDWNM
MSAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMF
FVILLVTLFGQNIFLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVP
GLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR

Sequences:

>Translated_311_residues
MTDYRTQPINQKNADFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVVSLIILAFIIIFITVAPWFFPFTYEDTDWNM
MSAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMF
FVILLVTLFGQNIFLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVP
GLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR
>Mature_310_residues
TDYRTQPINQKNADFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVVSLIILAFIIIFITVAPWFFPFTYEDTDWNMM
SAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMFF
VILLVTLFGQNIFLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPG
LILFESFLSFLGLGTQEPMSSWGALLSDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=303, Percent_Identity=69.3069306930693, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=36.5591397849462, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=33.7164750957854, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789964, Length=278, Percent_Identity=36.3309352517986, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=30.0411522633745, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=34.0909090909091, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787549, Length=283, Percent_Identity=27.5618374558304, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34660; Mature: 34529

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYRTQPINQKNADFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVVSLIILAFIII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FITVAPWFFPFTYEDTDWNMMSAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAG
HHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHH
AFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMFFVILLVTLFGQNIFLIFIAI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHH
GAIAWLGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVP
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHH
GLRDALDPKDR
HHHHCCCCCCC
>Mature Secondary Structure 
TDYRTQPINQKNADFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVVSLIILAFIII
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]