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The map label for this gene is rfaD [C]

Identifier: 148828276

GI number: 148828276

Start: 1710555

End: 1711034

Strand: Reverse

Name: rfaD [C]

Synonym: CGSHiGG_09230

Alternate gene names: 148828276

Gene position: 1711034-1710555 (Counterclockwise)

Preceding gene: 148828277

Following gene: 148828275

Centisome position: 90.67

GC content: 38.75

Gene sequence:

>480_bases
ATGGATTATCCCTCTTTTTTAACTTTTATTGTGATAACTAGCATACTGGATTTTGTTCGTCGCCCTGTAGTGCCAGAGGA
AATAAATAAAATCACGTTACAAGATCTTCAAGGGAATACGTTCTCTCTTGAAAGTCTTGATCAAAACAAACCCACATTAC
TTTATTTTTGGGGAACTTGGTGTGGTTATTGTCGTTATACTTCGCCAGCAATTAATTCTTTAGCAAACGAAGGCTATCAA
GTTGTATCGGTGGCATTACGTTCAGGCAATGAGGCGGACGTAAATGATTATTTAAGTAAGCATGACTACCACTTCACTAC
GGTTAATGATCCTAAAGGGGAATTTGCAGAACGATGGCAAATTAATGTGACGCCCACAATTGTGTTGTTGAGTAAAGGCA
AAATGGATCTTGTTACGACCGGCCTAACGAGTTATTGGGGATTAAAAGTGCGGTTGTTTTTCGCAGAGTTTTTTGGCTAA

Upstream 100 bases:

>100_bases
AGCAAAAATTCTTTATTTTTGACTATGGTTTTACGCTCAATTACAATCATCTCAACAAGATAAGGAATAAATAAAATGAA
GATTAAAAAATTACTCAAGA

Downstream 100 bases:

>100_bases
GCGGTAGAAAATCTATTACAATACGCAGACTTATTTTAAAGAGGACAGAATTATGATTATCGTAACAGGCGGCGCTGGTT
TTATTGGCAGCAATATTGTC

Product: ADP-L-glycero-D-mannoheptose-6-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDYPSFLTFIVITSILDFVRRPVVPEEINKITLQDLQGNTFSLESLDQNKPTLLYFWGTWCGYCRYTSPAINSLANEGYQ
VVSVALRSGNEADVNDYLSKHDYHFTTVNDPKGEFAERWQINVTPTIVLLSKGKMDLVTTGLTSYWGLKVRLFFAEFFG

Sequences:

>Translated_159_residues
MDYPSFLTFIVITSILDFVRRPVVPEEINKITLQDLQGNTFSLESLDQNKPTLLYFWGTWCGYCRYTSPAINSLANEGYQ
VVSVALRSGNEADVNDYLSKHDYHFTTVNDPKGEFAERWQINVTPTIVLLSKGKMDLVTTGLTSYWGLKVRLFFAEFFG
>Mature_159_residues
MDYPSFLTFIVITSILDFVRRPVVPEEINKITLQDLQGNTFSLESLDQNKPTLLYFWGTWCGYCRYTSPAINSLANEGYQ
VVSVALRSGNEADVNDYLSKHDYHFTTVNDPKGEFAERWQINVTPTIVLLSKGKMDLVTTGLTSYWGLKVRLFFAEFFG

Specific function: Involved In Disulfide Bond Formation. Catalyzes A Late, Reductive Step In The Assembly Of Periplasmic C-Type Cytochromes, Probably The Reduction Of Disulfide Bonds Of The Apocytochrome C To Allow Covalent Linkage With The Heme. Possible Subunit Of A Heme

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR017937
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: NA

Molecular weight: Translated: 18169; Mature: 18169

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYPSFLTFIVITSILDFVRRPVVPEEINKITLQDLQGNTFSLESLDQNKPTLLYFWGTW
CCCHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCEEEECCCCCCCCEEEEECCCC
CGYCRYTSPAINSLANEGYQVVSVALRSGNEADVNDYLSKHDYHFTTVNDPKGEFAERWQ
CCHHCCCCHHHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCHHHEEE
INVTPTIVLLSKGKMDLVTTGLTSYWGLKVRLFFAEFFG
ECCCEEEEEEECCCEEEEECCHHHHHHHHHHEEEHHHCC
>Mature Secondary Structure
MDYPSFLTFIVITSILDFVRRPVVPEEINKITLQDLQGNTFSLESLDQNKPTLLYFWGTW
CCCHHHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCEEEECCCCCCCCEEEEECCCC
CGYCRYTSPAINSLANEGYQVVSVALRSGNEADVNDYLSKHDYHFTTVNDPKGEFAERWQ
CCHHCCCCHHHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCHHHEEE
INVTPTIVLLSKGKMDLVTTGLTSYWGLKVRLFFAEFFG
ECCCEEEEEEECCCEEEEECCHHHHHHHHHHEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]