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The map label for this gene is ccmB [H]

Identifier: 148828252

GI number: 148828252

Start: 1683644

End: 1684309

Strand: Direct

Name: ccmB [H]

Synonym: CGSHiGG_09090

Alternate gene names: 148828252

Gene position: 1683644-1684309 (Clockwise)

Preceding gene: 148828251

Following gene: 148828253

Centisome position: 89.21

GC content: 41.44

Gene sequence:

>666_bases
ATGATTTTTTTAGAGATAATTAAACGAGAACTTCAAATTGCAATGCGCAAAAATGCGGAGATTTTAAATCCGCTATGGTT
CTTTTTGCTTGTGATTACTTTGTTTCCGCTTGTTATTGGGCCAGAGCCTAAATTACTTTCCCGTATCGCACCGAGTATCG
CATGGGTAGCTGCATTACTTTCAGCATTGCTTTCTTTTGAACGTTTATTCCGTGATGATTTTATTGATGGCTCTCTTGAA
CAATTAATGCTAACCGCACAGCCTTTGCCAATGACAGCTTTGGCTAAAGTCGTTGCACATTGGTTGCTCACTGGTTTGCC
GCTTATTTTATTATCGCCTATTGCGGCTTTGTTACTTTCTCTTGAAGTGAATATTTGGTGGGCATTAGTCTTGACATTGT
TACTGGGCACCCCTGTATTGAGCTGTATCGGTGCTATTGGTGTGGCTTTAACGGTGGGGTTGCGAAAAGGTGGCGTGTTG
TTGAGTTTGCTTGTTGTTCCGTTGTTTATTCCTGTTTTAATTTTTGCTTCATCAATACTAGAAGCAGCAGGATTAAATGT
GTCTTATGGGGGACAACTGGCGATTTTAGGTGCCATGATGGTTGGTGCAGTAACGCTTTCGCCTTTTGCCATCGCGGCAG
CGTTGCGAATTAGTTTAGATAATTAA

Upstream 100 bases:

>100_bases
GCTCAACGTGGAGGTATTGTGTTATTGACCAGCCACCAAGAAGTGCCAAGTTCTCATCTGCAAAAATTGAATTTAGCGGC
TTATAAAGCGGAATAACTTA

Downstream 100 bases:

>100_bases
TTTTATTTCATTGTATAAAAGTGCGGTAGTTTTTCTCTTTAATTTTTAAGGATCTTTTTTATGTGGAAGTGGTTACATCC
TTATGCAAAACCAGAAACTC

Product: heme exporter protein B

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIFLEIIKRELQIAMRKNAEILNPLWFFLLVITLFPLVIGPEPKLLSRIAPSIAWVAALLSALLSFERLFRDDFIDGSLE
QLMLTAQPLPMTALAKVVAHWLLTGLPLILLSPIAALLLSLEVNIWWALVLTLLLGTPVLSCIGAIGVALTVGLRKGGVL
LSLLVVPLFIPVLIFASSILEAAGLNVSYGGQLAILGAMMVGAVTLSPFAIAAALRISLDN

Sequences:

>Translated_221_residues
MIFLEIIKRELQIAMRKNAEILNPLWFFLLVITLFPLVIGPEPKLLSRIAPSIAWVAALLSALLSFERLFRDDFIDGSLE
QLMLTAQPLPMTALAKVVAHWLLTGLPLILLSPIAALLLSLEVNIWWALVLTLLLGTPVLSCIGAIGVALTVGLRKGGVL
LSLLVVPLFIPVLIFASSILEAAGLNVSYGGQLAILGAMMVGAVTLSPFAIAAALRISLDN
>Mature_221_residues
MIFLEIIKRELQIAMRKNAEILNPLWFFLLVITLFPLVIGPEPKLLSRIAPSIAWVAALLSALLSFERLFRDDFIDGSLE
QLMLTAQPLPMTALAKVVAHWLLTGLPLILLSPIAALLLSLEVNIWWALVLTLLLGTPVLSCIGAIGVALTVGLRKGGVL
LSLLVVPLFIPVLIFASSILEAAGLNVSYGGQLAILGAMMVGAVTLSPFAIAAALRISLDN

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=220, Percent_Identity=64.5454545454545, Blast_Score=228, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 23692; Mature: 23692

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFLEIIKRELQIAMRKNAEILNPLWFFLLVITLFPLVIGPEPKLLSRIAPSIAWVAALL
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SALLSFERLFRDDFIDGSLEQLMLTAQPLPMTALAKVVAHWLLTGLPLILLSPIAALLLS
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVNIWWALVLTLLLGTPVLSCIGAIGVALTVGLRKGGVLLSLLVVPLFIPVLIFASSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EAAGLNVSYGGQLAILGAMMVGAVTLSPFAIAAALRISLDN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFLEIIKRELQIAMRKNAEILNPLWFFLLVITLFPLVIGPEPKLLSRIAPSIAWVAALL
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SALLSFERLFRDDFIDGSLEQLMLTAQPLPMTALAKVVAHWLLTGLPLILLSPIAALLLS
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVNIWWALVLTLLLGTPVLSCIGAIGVALTVGLRKGGVLLSLLVVPLFIPVLIFASSIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EAAGLNVSYGGQLAILGAMMVGAVTLSPFAIAAALRISLDN
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]