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The map label for this gene is degS [H]

Identifier: 148828122

GI number: 148828122

Start: 1535542

End: 1536564

Strand: Direct

Name: degS [H]

Synonym: CGSHiGG_08290

Alternate gene names: 148828122

Gene position: 1535542-1536564 (Clockwise)

Preceding gene: 148828121

Following gene: 148828130

Centisome position: 81.37

GC content: 39.98

Gene sequence:

>1023_bases
ATGCTTAAAAAACTTTTCCATTCCGCACTTTGGGGCTTGGCTGCTGCGGGCGTGATTTTGTTTGCGGTTCCAAGACTGAA
TAACAGCAATATCTTCACTTCAGACGATATTGTATCGTTCAAAAATGCCGTGCGTATTGCCTCTCCAGCAGTAGTGAATG
TTTATAACCGCTCTTTTTCTTCCGCCAGCATTAATGATAATGATCAGCTACAAGTGAATAACTTAGGTTCTGGTGTGATT
ATGAGTAAAGATGGCTATATTCTGACGAATAAACACGTCATCCAAAATGCAGATCAAATTGTAGTAGCGTTGCAAAACGG
AAATATTTTTGAGGCCAGTCTTGTTGGTTCAGATGATCTCACTGATCTCGCTGTTCTTAAAATTCGTGCAAATAATCTTT
CAACTATTCCACAAAATTCAGCGCGTCAAGCTCACGTCGGCGATGTGGTATTAGCAATCGGTAATCCCTACAACTTAGGA
CAAAGCGTGTCTCAAGGAATCATTAGCGCAATCGGTCGTAATGCGGTAGGCGATTCGGTGGGCAGACAAAATTTTATTCA
AACTGATGCTTCAATTAACCGCGGAAACTCAGGCGGTGCCTTAATTAACTCTGCTGGGGAATTGGTTGGAATTAGCACGC
TAAGTATTGGCAAAACCGCCAATGAAATCGCAGAAGGACTAAATTTTGCCATTCCAATAGATATTGCAAATGATGTACTA
CGTAAAATTATGCGTGATGGACGTGTGATTCGAGGTTATTTTGGTGTACAAAGTGATATTAGTTCAAGTAGTGAAGAAGG
CATAGTTATCACAGACGTAAGCCCGAACAGCCCAGCTGCGAAATCAGGTATTCAAGTTGGCGATGTGATTTTGAAATTAA
ATAATCAAGAAGGGATTTCAGCCCGAGAAATGATGCAAATTATCGCAAATACAAAACCTAATTCAAAAGTTCTCGTCACC
ATTCTCCGATTAGGCAAAATCTTACAAATTCCAGTTGTTATTGAAGAATTTCCAGTAAATTAA

Upstream 100 bases:

>100_bases
GAATTTAACTAAACTTGCCGATGCACCATTATGGCAACTCAATGAATTAGAACAAATCGGTGACGATATAAAATTAACTT
ACACACCGAAAGGAGTCTAA

Downstream 100 bases:

>100_bases
AAATAGCGGTCTATTTTGACCGCTGTTTTCATTATATTTAATACTTTCTTTTCAATTTGAAAATTTATTTGTTCTAACCC
CTTTTCTGACATTTCGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MLKKLFHSALWGLAAAGVILFAVPRLNNSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFSSASINDNDQLQVNNLGSGVI
MSKDGYILTNKHVIQNADQIVVALQNGNIFEASLVGSDDLTDLAVLKIRANNLSTIPQNSARQAHVGDVVLAIGNPYNLG
QSVSQGIISAIGRNAVGDSVGRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTANEIAEGLNFAIPIDIANDVL
RKIMRDGRVIRGYFGVQSDISSSSEEGIVITDVSPNSPAAKSGIQVGDVILKLNNQEGISAREMMQIIANTKPNSKVLVT
ILRLGKILQIPVVIEEFPVN

Sequences:

>Translated_340_residues
MLKKLFHSALWGLAAAGVILFAVPRLNNSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFSSASINDNDQLQVNNLGSGVI
MSKDGYILTNKHVIQNADQIVVALQNGNIFEASLVGSDDLTDLAVLKIRANNLSTIPQNSARQAHVGDVVLAIGNPYNLG
QSVSQGIISAIGRNAVGDSVGRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTANEIAEGLNFAIPIDIANDVL
RKIMRDGRVIRGYFGVQSDISSSSEEGIVITDVSPNSPAAKSGIQVGDVILKLNNQEGISAREMMQIIANTKPNSKVLVT
ILRLGKILQIPVVIEEFPVN
>Mature_340_residues
MLKKLFHSALWGLAAAGVILFAVPRLNNSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFSSASINDNDQLQVNNLGSGVI
MSKDGYILTNKHVIQNADQIVVALQNGNIFEASLVGSDDLTDLAVLKIRANNLSTIPQNSARQAHVGDVVLAIGNPYNLG
QSVSQGIISAIGRNAVGDSVGRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTANEIAEGLNFAIPIDIANDVL
RKIMRDGRVIRGYFGVQSDISSSSEEGIVITDVSPNSPAAKSGIQVGDVILKLNNQEGISAREMMQIIANTKPNSKVLVT
ILRLGKILQIPVVIEEFPVN

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Homo sapiens, GI4506141, Length=291, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI22129776, Length=268, Percent_Identity=32.8358208955224, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI7019477, Length=288, Percent_Identity=30.5555555555556, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI24308541, Length=246, Percent_Identity=32.9268292682927, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI1789630, Length=356, Percent_Identity=51.685393258427, Blast_Score=330, Evalue=6e-92,
Organism=Escherichia coli, GI1789629, Length=290, Percent_Identity=38.9655172413793, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786356, Length=274, Percent_Identity=39.7810218978102, Blast_Score=176, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24646839, Length=291, Percent_Identity=30.2405498281787, Blast_Score=124, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011783
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.-

Molecular weight: Translated: 36011; Mature: 36011

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLFHSALWGLAAAGVILFAVPRLNNSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFS
CHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHEECCCEEEEEECCCCC
SASINDNDQLQVNNLGSGVIMSKDGYILTNKHVIQNADQIVVALQNGNIFEASLVGSDDL
CCCCCCCCCEEEECCCCEEEEECCCEEEECCHHHCCCCEEEEEEECCCEEEEEECCCCCC
TDLAVLKIRANNLSTIPQNSARQAHVGDVVLAIGNPYNLGQSVSQGIISAIGRNAVGDSV
CCEEEEEEECCCCCCCCCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHH
GRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTANEIAEGLNFAIPIDIANDVL
CCCHHEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCHHHHHHCCCEEEEECHHHHHH
RKIMRDGRVIRGYFGVQSDISSSSEEGIVITDVSPNSPAAKSGIQVGDVILKLNNQEGIS
HHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHCCCEEEEEEEEECCCCCCC
AREMMQIIANTKPNSKVLVTILRLGKILQIPVVIEEFPVN
HHHHHHHHHCCCCCCHHHHEEHHHCCEEECCEEEECCCCC
>Mature Secondary Structure
MLKKLFHSALWGLAAAGVILFAVPRLNNSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFS
CHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHEECCCEEEEEECCCCC
SASINDNDQLQVNNLGSGVIMSKDGYILTNKHVIQNADQIVVALQNGNIFEASLVGSDDL
CCCCCCCCCEEEECCCCEEEEECCCEEEECCHHHCCCCEEEEEEECCCEEEEEECCCCCC
TDLAVLKIRANNLSTIPQNSARQAHVGDVVLAIGNPYNLGQSVSQGIISAIGRNAVGDSV
CCEEEEEEECCCCCCCCCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHH
GRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTANEIAEGLNFAIPIDIANDVL
CCCHHEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCHHHHHHCCCEEEEECHHHHHH
RKIMRDGRVIRGYFGVQSDISSSSEEGIVITDVSPNSPAAKSGIQVGDVILKLNNQEGIS
HHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHCCCEEEEEEEEECCCCCCC
AREMMQIIANTKPNSKVLVTILRLGKILQIPVVIEEFPVN
HHHHHHHHHCCCCCCHHHHEEHHHCCEEECCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]