Click here to switch to the map view.

The map label for this gene is 148827717

Identifier: 148827717

GI number: 148827717

Start: 1073386

End: 1074180

Strand: Reverse

Name: 148827717

Synonym: CGSHiGG_05880

Alternate gene names: NA

Gene position: 1074180-1073386 (Counterclockwise)

Preceding gene: 148827719

Following gene: 148827716

Centisome position: 56.92

GC content: 36.86

Gene sequence:

>795_bases
ATGAAAAAACTTACTTCCATTCTTTCTCTTATTGTTCTCGTTATATTAGCAATTTGGCAATATTTTACCGATACAGCCAA
AACTAAACATCAATCATCTTCTCCCGTAATTGAGCAGACGAAGCAAACAAAAGTATCTGAGCCTAAATTTGAACCTAAAT
TCGAGCCTAAATTTGAGACAAAGCGGACGGATATTGAAAAAAGTGCGGTAAAAAATCCAGATGTTTTTGCAAACTATGAT
GTGATTATGCGCAATGATCATATTGGGCAAAATGCAAAGGCACCAGTCGATTATTATATGTTGGCATTATCTTGGTCGCC
TGGATTTTGTGATATTCAGCGTGAAAAATATGGCGATCAGTTGCCTTATTCCTCTCAATATCAATGTGGAAATAACCGCA
CTTTTGGTTGGGTTGTACATGGGCTATGGCCACAAAATGCAAATGCTCGCGCTGTTTCAGATCATCCTCGTTTTTGCAAA
GGCGATTTACCCGCCTTGCCAAAAGGTTTATTAGCACAATATTTGGCGATTTCTCCGGGCGAGAAATTATTGCAAGGCGA
ATGGGAAAAACATGGTAGTTGCGCCTTTGATTCTGCCCAGCAATATTTTGCTAAGGAGCAGGAATTATTTAACGCATTAA
AATTACCGAATCAAAAATTAAGTAGAGATGAACTTTTTGGTTGGATGAAGCAACATAATCCACAATTAAAAAATGCGTAT
TTGAGGGCTAGTCGAAATGAATTATTTATTTGTTATGATAAAAAATGGCAGGTAATGAATTGCCAAAGCAAATAA

Upstream 100 bases:

>100_bases
TTGCTAGTGATGAGTAATGCCATTGTGATCCTTAATAGAAAGTTGAAAGCGGCGAATTATAGCCGACAAAAACTTGATTG
ACAAAAACTAAACAAAATTT

Downstream 100 bases:

>100_bases
GAATTTCTTTGATCTAAATCGTTACAACCTAGCACGAAGTAGGTATAATACGAGAAGTTTTCAATTTTAATTTTAACTTA
ACAAGAGGATAGATTATGTC

Product: ribonuclease I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKKLTSILSLIVLVILAIWQYFTDTAKTKHQSSSPVIEQTKQTKVSEPKFEPKFEPKFETKRTDIEKSAVKNPDVFANYD
VIMRNDHIGQNAKAPVDYYMLALSWSPGFCDIQREKYGDQLPYSSQYQCGNNRTFGWVVHGLWPQNANARAVSDHPRFCK
GDLPALPKGLLAQYLAISPGEKLLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLPNQKLSRDELFGWMKQHNPQLKNAY
LRASRNELFICYDKKWQVMNCQSK

Sequences:

>Translated_264_residues
MKKLTSILSLIVLVILAIWQYFTDTAKTKHQSSSPVIEQTKQTKVSEPKFEPKFEPKFETKRTDIEKSAVKNPDVFANYD
VIMRNDHIGQNAKAPVDYYMLALSWSPGFCDIQREKYGDQLPYSSQYQCGNNRTFGWVVHGLWPQNANARAVSDHPRFCK
GDLPALPKGLLAQYLAISPGEKLLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLPNQKLSRDELFGWMKQHNPQLKNAY
LRASRNELFICYDKKWQVMNCQSK
>Mature_264_residues
MKKLTSILSLIVLVILAIWQYFTDTAKTKHQSSSPVIEQTKQTKVSEPKFEPKFEPKFETKRTDIEKSAVKNPDVFANYD
VIMRNDHIGQNAKAPVDYYMLALSWSPGFCDIQREKYGDQLPYSSQYQCGNNRTFGWVVHGLWPQNANARAVSDHPRFCK
GDLPALPKGLLAQYLAISPGEKLLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLPNQKLSRDELFGWMKQHNPQLKNAY
LRASRNELFICYDKKWQVMNCQSK

Specific function: Unknown

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase T2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001568
- InterPro:   IPR018188 [H]

Pfam domain/function: PF00445 Ribonuclease_T2 [H]

EC number: NA

Molecular weight: Translated: 30449; Mature: 30449

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00530 RNASE_T2_1 ; PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTSILSLIVLVILAIWQYFTDTAKTKHQSSSPVIEQTKQTKVSEPKFEPKFEPKFET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
KRTDIEKSAVKNPDVFANYDVIMRNDHIGQNAKAPVDYYMLALSWSPGFCDIQREKYGDQ
HHHHHHHHHCCCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCC
LPYSSQYQCGNNRTFGWVVHGLWPQNANARAVSDHPRFCKGDLPALPKGLLAQYLAISPG
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHCCCC
EKLLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLPNQKLSRDELFGWMKQHNPQLKNAY
HHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
LRASRNELFICYDKKWQVMNCQSK
HHCCCCCEEEEECCCEEEECCCCC
>Mature Secondary Structure
MKKLTSILSLIVLVILAIWQYFTDTAKTKHQSSSPVIEQTKQTKVSEPKFEPKFEPKFET
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
KRTDIEKSAVKNPDVFANYDVIMRNDHIGQNAKAPVDYYMLALSWSPGFCDIQREKYGDQ
HHHHHHHHHCCCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCC
LPYSSQYQCGNNRTFGWVVHGLWPQNANARAVSDHPRFCKGDLPALPKGLLAQYLAISPG
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHCCCC
EKLLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLPNQKLSRDELFGWMKQHNPQLKNAY
HHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
LRASRNELFICYDKKWQVMNCQSK
HHCCCCCEEEEECCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]