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The map label for this gene is rbsR [H]

Identifier: 148827699

GI number: 148827699

Start: 1049131

End: 1050129

Strand: Direct

Name: rbsR [H]

Synonym: CGSHiGG_05790

Alternate gene names: 148827699

Gene position: 1049131-1050129 (Clockwise)

Preceding gene: 148827698

Following gene: 148827700

Centisome position: 55.59

GC content: 41.04

Gene sequence:

>999_bases
ATGGCGACAATGAAAGATATTGCACGACTGGCGCAAGTTTCGACTTCCACAGTTTCACATGTCATTAATGGATCGCGTTT
TGTTAGCGATGAAATTCGTGAGAAAGTGATGCGTATTGTCGCTGAACTGAATTACACCCCCTCAGCTGTTGCACGAAGCC
TTAAGGTGCGCGAAACCAAAACTATCGGGCTACTTGTCACCGCAACAAATAATCCCTTCTTTGCGGAAGTGATGGCTGGC
GTGGAGCAATATTGTCAGAAAAATCAATATAATCTTATTATTGCTACAACGGGTGGAGATGCCAAACGCCTACAACAAAA
TCTGCAAACTCTAATGCACAAACAAGTGGATGGTTTGCTTTTGATGTGTGGTGATAGCCGTTTTCAGGCTGATATAGAGT
TAGCTATTTCGCTGCCACTGGTTGTGATGGACTGGTGGTTTACTGAGTTAAATGCAGATAAAATACTCGAAAATTCAGCA
CTTGGTGGCTATTTGGCGACAAAAGCATTAATTGATGCAGGACATCGTAAAATTGGCATTATTACGGGAAATCTCAAAAA
ATCTGTCGCACAAAATCGTTTGCAAGGTTATAAAAATGCACTGTCGGAAGCAAAAATTGCGTTAAATCCTCATTGGATTG
TCGAAAGTCATTTTGACTTTGAAGGCGGTGTACTTGGCATACAATCTTTACTTACTCAATCTTCACGTCCAACAGCAGTT
TTTTGTTGTAGTGACACCATTGCTGTCGGTGCATATCAAGCTATTCAGCAACAAGGCTTACGTATTCCGCAAGATCTTTC
AATTATGGGCTATGATGACATTGAATTGGCTCGTTATCTCTCGCCTCCTCTCTCCACCATTTGCCAACCGAAAGCTGAAC
TTGGCAAACTCGCTGTTGAAACACTATTGCAACGAATTAAAAATCCTAATGAAAATTACCGCACTTTGGTGTTAGAACCG
ACTTGTGTGTTAAGAGAGTCTATTTACAGTTTCAAATAA

Upstream 100 bases:

>100_bases
TGTGACGAAAAAAGGGGCTCAATCCTCTATTCCAACGCGGCAAGAAACTTTGGAATTTCTTGAACACGCTTAAAGTGCGG
TGAATTTTTAGGGTGTTTTT

Downstream 100 bases:

>100_bases
AATTAGAATAACTCAATTTCCTTATTGCTATTTTCAAAAAAACTGCTATTTTCTTGCGGTTTTTTTGTTTATTTAACCCA
CTGTTTAATTTAGGAATAAA

Product: ribokinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVETLLQRIKNPNENYRTLVLEP
TCVLRESIYSFK

Sequences:

>Translated_332_residues
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAG
VEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSA
LGGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVETLLQRIKNPNENYRTLVLEP
TCVLRESIYSFK
>Mature_331_residues
ATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETKTIGLLVTATNNPFFAEVMAGV
EQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLLLMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSAL
GGYLATKALIDAGHRKIGIITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAVF
CCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVETLLQRIKNPNENYRTLVLEPT
CVLRESIYSFK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=330, Percent_Identity=49.3939393939394, Blast_Score=323, Evalue=1e-89,
Organism=Escherichia coli, GI1787948, Length=331, Percent_Identity=43.8066465256798, Blast_Score=291, Evalue=3e-80,
Organism=Escherichia coli, GI1790369, Length=327, Percent_Identity=34.5565749235474, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1788474, Length=333, Percent_Identity=33.033033033033, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789202, Length=332, Percent_Identity=33.1325301204819, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789068, Length=301, Percent_Identity=30.5647840531561, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1787580, Length=312, Percent_Identity=31.4102564102564, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1790715, Length=321, Percent_Identity=26.791277258567, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI48994940, Length=309, Percent_Identity=27.831715210356, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786540, Length=307, Percent_Identity=29.3159609120521, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787906, Length=327, Percent_Identity=24.1590214067278, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1786268, Length=323, Percent_Identity=25.6965944272446, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1789456, Length=317, Percent_Identity=25.5520504731861, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790192, Length=270, Percent_Identity=28.8888888888889, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36750; Mature: 36619

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETK
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEE
TIGLLVTATNNPFFAEVMAGVEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
LMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSALGGYLATKALIDAGHRKIGI
EEECCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEE
ITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
EECHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCCCCCHHHHHHHHCCCCCCCEE
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVE
EEECCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCCCCHHHHCCCHHHHHHHHHH
TLLQRIKNPNENYRTLVLEPTCVLRESIYSFK
HHHHHHCCCCCCCEEEEECCHHHHHHHHHCCC
>Mature Secondary Structure 
ATMKDIARLAQVSTSTVSHVINGSRFVSDEIREKVMRIVAELNYTPSAVARSLKVRETK
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEE
TIGLLVTATNNPFFAEVMAGVEQYCQKNQYNLIIATTGGDAKRLQQNLQTLMHKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
LMCGDSRFQADIELAISLPLVVMDWWFTELNADKILENSALGGYLATKALIDAGHRKIGI
EEECCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEE
ITGNLKKSVAQNRLQGYKNALSEAKIALNPHWIVESHFDFEGGVLGIQSLLTQSSRPTAV
EECHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCCCCCHHHHHHHHCCCCCCCEE
FCCSDTIAVGAYQAIQQQGLRIPQDLSIMGYDDIELARYLSPPLSTICQPKAELGKLAVE
EEECCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHCCCCHHHHCCCHHHHHHHHHH
TLLQRIKNPNENYRTLVLEPTCVLRESIYSFK
HHHHHHCCCCCCCEEEEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]