Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 148827696

GI number: 148827696

Start: 1046219

End: 1047187

Strand: Direct

Name: rbsC [H]

Synonym: CGSHiGG_05775

Alternate gene names: 148827696

Gene position: 1046219-1047187 (Clockwise)

Preceding gene: 148827695

Following gene: 148827697

Centisome position: 55.44

GC content: 37.36

Gene sequence:

>969_bases
ATGAAAAATGAAACATCTAATTTTCAAATAGGAAGATTTTTGATTGAACAGCGTTCTTTTATTGCGTTGATTATTCTTAT
CGCGATTGTATCAATGGTTAATCCTGATTTTTTTAGCGTAGATAATATTTTGAATATTTTACGCCAAACTTCGGTTAATG
CGATTATTGCAGTGGGTATGACTTTCGTTATTTTAATTGCTGGTATAGATCTTTCTGTTGGATCTGTATTGGCATTGACA
GGTGCAATCGCCGCTTCAATGGTGAGTATTGAATTGCCTATTTTTTTAGTCATTCCTGTGGTTTTATTGATTGGAACACT
TCTTGGTGGCATAAGTGGTGTAATTGTGGCAAAGGGAAAAGTTCAGGCTTTTATTGCTACCTTGGTTACCATGACCTTAC
TGCGTGGTATAACAATGGTTTATACAGATGGTCGTCCTATTACGACAGGTTTTTCGGATAATGCTGATCTATTTGCTAGC
ATTGGTACAGGCTATGTTTTAGGTATCCCAGTACCAATTTGGATTATGAGTATCGTGTTTGCGGTTGCTTGGTATATTTT
AAAACACACACCAATCGGTCGCTATATTTATGCTTTAGGTGGAAATGAGGCTGCGACCCAACTTTCTGGTATTAACGTCA
ATAAAATCAAAGTATTTGTTTTTGCGGTGAGTGGATTTCTTTCTGCGCTGGCGGGTTTAATTGTAACTTCACGTTTATCT
TCCGCTCAACCCACTGCTGGCGTATCTTATGAATTAGATGCAATTGCCGCCGTGGTAGTCGGTGGAACCAGTTTGATGGG
GGGGAAAGGTCGTGTAATGGGAACTCTCATCGGTGCATTAATCATCGGATTTTTAAACAATGCATTAAATTTATTAGATA
TTTCATCTTACTATCAAATGATAGCAAAAGCGTTGGTTATTTTGGTTGCTGTTTTAGCCGATAACTATCTTGGTACAAAA
AAACTGTAA

Upstream 100 bases:

>100_bases
GAATCAGTGCAGAATTTTCTCGCAAAGAGGCAACACAAGAAAAGTTATTAGCAGCAGCTATTGGTAAATAAGAGTAGGTA
AATAAGAGTAGGTAAGTATG

Downstream 100 bases:

>100_bases
CTCACTTTAAGGAGAAACTATGAAAAAACTAACCGCACTTACTTCTGCTGTATTATTAGGTTTGGCTGTTTCTGGCTCTG
CTTCTGCACAAGACACAATC

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKNETSNFQIGRFLIEQRSFIALIILIAIVSMVNPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALT
GAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFAS
IGTGYVLGIPVPIWIMSIVFAVAWYILKHTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRLS
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTK
KL

Sequences:

>Translated_322_residues
MKNETSNFQIGRFLIEQRSFIALIILIAIVSMVNPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALT
GAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFAS
IGTGYVLGIPVPIWIMSIVFAVAWYILKHTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRLS
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTK
KL
>Mature_322_residues
MKNETSNFQIGRFLIEQRSFIALIILIAIVSMVNPDFFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALT
GAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFAS
IGTGYVLGIPVPIWIMSIVFAVAWYILKHTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRLS
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQMIAKALVILVAVLADNYLGTK
KL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=68.3168316831683, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=40.1898734177215, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=36.9565217391304, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI145693152, Length=316, Percent_Identity=34.4936708860759, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=37.9008746355685, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=36.1702127659575, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=35.474006116208, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=36.4661654135338, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=31.5972222222222, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787794, Length=301, Percent_Identity=30.2325581395349, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33846; Mature: 33846

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNETSNFQIGRFLIEQRSFIALIILIAIVSMVNPDFFSVDNILNILRQTSVNAIIAVGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TFVILIAGIDLSVGSVLALTGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
VQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFASIGTGYVLGIPVPIWIMSIVF
HHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHHH
AVAWYILKHTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRLS
HHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCC
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQM
CCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKALVILVAVLADNYLGTKKL
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKNETSNFQIGRFLIEQRSFIALIILIAIVSMVNPDFFSVDNILNILRQTSVNAIIAVGM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TFVILIAGIDLSVGSVLALTGAIAASMVSIELPIFLVIPVVLLIGTLLGGISGVIVAKGK
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
VQAFIATLVTMTLLRGITMVYTDGRPITTGFSDNADLFASIGTGYVLGIPVPIWIMSIVF
HHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHHH
AVAWYILKHTPIGRYIYALGGNEAATQLSGINVNKIKVFVFAVSGFLSALAGLIVTSRLS
HHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHCC
SAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALIIGFLNNALNLLDISSYYQM
CCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKALVILVAVLADNYLGTKKL
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]