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The map label for this gene is rbsB [H]

Identifier: 148827697

GI number: 148827697

Start: 1047207

End: 1048085

Strand: Direct

Name: rbsB [H]

Synonym: CGSHiGG_05780

Alternate gene names: 148827697

Gene position: 1047207-1048085 (Clockwise)

Preceding gene: 148827696

Following gene: 148827698

Centisome position: 55.49

GC content: 39.82

Gene sequence:

>879_bases
ATGAAAAAACTAACCGCACTTACTTCTGCTGTATTATTAGGTTTGGCTGTTTCTGGCTCTGCTTCTGCACAAGACACAAT
CGCTTTGGCAGTATCTACATTAGATAACCCATTTTTTGTAACGTTAAAAGATGGCGCACAGAAAAAAGCGGATGAATTAG
GTTATAAGTTAGTAGTGCTTGATTCACAAAATGACCCTGCTAAAGAATTAGCTAATGTCGAAGATTTAACTGTGCGTGGT
GCAAAAATATTATTGATCAATCCAACTGATTCTGAAGCTGTTGGCAACGCAGTGGCGATTGCAAACCGTAAGCATATTCC
AGTAATTACATTAGATCGTGGCGCAGCTAAAGGAAACGTAGTGAGCCATATTGCATCTGACAATATCGCAGGTGGTAAAA
TGGCAGGTGATTTTATCGCACAGAAATTAGGCGATAATGCCAAGGTGATTCAACTTGAAGGTATTGCAGGAACATCTGCG
GCACGCGAACGAGGTGAGGGTTTCAAACAAGCTATTGATGCTCATAAATTCAATGTGCTTGCCAGTCAGCCAGCAGATTT
TGATCGAACAAAAGGTTTGAATGTAACGGAAAATTTGTTGGCATCTAAAGGTGATGTTCAAGCAATTTTTGCGCAAAATG
ATGAAATGGCATTAGGTGCATTACGTGCGGTGAAAGCCGCAAATAAAAAAGTCCTTATCGTAGGTTTTGATGGTACCGAT
GATGGTGTTAAAGCGGTAAAAAGTGGCAAAATGGCAGCAACTATCGCACAACAACCCGAGCTTATTGGTTCATTAGGTGT
TGTTACCGCTGATAAAATCTTAAAGGGCGAAAAAGTTGAAGCGAAAATTCCAGTAGATTTGAAAGTAATAAGTGAATAA

Upstream 100 bases:

>100_bases
TACTATCAAATGATAGCAAAAGCGTTGGTTATTTTGGTTGCTGTTTTAGCCGATAACTATCTTGGTACAAAAAAACTGTA
ACTCACTTTAAGGAGAAACT

Downstream 100 bases:

>100_bases
TCTATCTACTAAATAAGCTCGTTATATCACATTATGGGGCAAATTATATTTGTCCCATTGTGTAGAAAGAAAAAATATAA
CAATACAGGATAAAATAATG

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKLTALTSAVLLGLAVSGSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLTVRG
AKILLINPTDSEAVGNAVAIANRKHIPVITLDRGAAKGNVVSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSA
ARERGEGFKQAIDAHKFNVLASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAANKKVLIVGFDGTD
DGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEKVEAKIPVDLKVISE

Sequences:

>Translated_292_residues
MKKLTALTSAVLLGLAVSGSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLTVRG
AKILLINPTDSEAVGNAVAIANRKHIPVITLDRGAAKGNVVSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSA
ARERGEGFKQAIDAHKFNVLASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAANKKVLIVGFDGTD
DGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEKVEAKIPVDLKVISE
>Mature_292_residues
MKKLTALTSAVLLGLAVSGSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVLDSQNDPAKELANVEDLTVRG
AKILLINPTDSEAVGNAVAIANRKHIPVITLDRGAAKGNVVSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSA
ARERGEGFKQAIDAHKFNVLASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAANKKVLIVGFDGTD
DGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEKVEAKIPVDLKVISE

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=291, Percent_Identity=74.5704467353952, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1790526, Length=299, Percent_Identity=36.1204013377926, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=29.1304347826087, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790194, Length=230, Percent_Identity=24.7826086956522, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788473, Length=277, Percent_Identity=25.2707581227437, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787948, Length=282, Percent_Identity=24.468085106383, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789990, Length=272, Percent_Identity=25, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30315; Mature: 30315

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTALTSAVLLGLAVSGSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVL
CCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHCCEEEEEE
DSQNDPAKELANVEDLTVRGAKILLINPTDSEAVGNAVAIANRKHIPVITLDRGAAKGNV
ECCCCCHHHHCCCCCEEECCEEEEEECCCCCHHCCCEEEEECCCCCCEEEECCCCCCCCH
VSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSAARERGEGFKQAIDAHKFNVL
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEE
ASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAANKKVLIVGFDGTD
ECCCCCCHHCCCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCC
DGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEKVEAKIPVDLKVISE
HHHHHHHCCCEEEEHHCCCHHHHHCCCEEHHHHHCCCCEEEECCEEEEEECC
>Mature Secondary Structure
MKKLTALTSAVLLGLAVSGSASAQDTIALAVSTLDNPFFVTLKDGAQKKADELGYKLVVL
CCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHCCEEEEEE
DSQNDPAKELANVEDLTVRGAKILLINPTDSEAVGNAVAIANRKHIPVITLDRGAAKGNV
ECCCCCHHHHCCCCCEEECCEEEEEECCCCCHHCCCEEEEECCCCCCEEEECCCCCCCCH
VSHIASDNIAGGKMAGDFIAQKLGDNAKVIQLEGIAGTSAARERGEGFKQAIDAHKFNVL
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEE
ASQPADFDRTKGLNVTENLLASKGDVQAIFAQNDEMALGALRAVKAANKKVLIVGFDGTD
ECCCCCCHHCCCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCC
DGVKAVKSGKMAATIAQQPELIGSLGVVTADKILKGEKVEAKIPVDLKVISE
HHHHHHHCCCEEEEHHCCCHHHHHCCCEEHHHHHCCCCEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]