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The map label for this gene is ydeU [H]

Identifier: 148827652

GI number: 148827652

Start: 1001351

End: 1003522

Strand: Direct

Name: ydeU [H]

Synonym: CGSHiGG_05515

Alternate gene names: 148827652

Gene position: 1001351-1003522 (Clockwise)

Preceding gene: 148827651

Following gene: 148827657

Centisome position: 53.06

GC content: 39.0

Gene sequence:

>2172_bases
TTGGCTGTTGATTACGTTTACGACAAAACCAAGCTCACTGATGATGAAATTATCCGCTTAAAAAAACTCCGCGATAGAAA
TAGTGAATATTGGAAAGATGATTTGTTCAGATTTGATTTGCCAAATGACTCGGGAAAATATTTTGAAGGAAAACCTATTC
TCCGTCATGACATTGAGGGGGCGGCAAAAGGGAATTTCTTATATCCAATTTTAACTTTTTCTAAAAAGACTTATAACGAT
ACTATTAATCCTGACGAAAAAATCTCTTTTTTCGACAGCCCTTATACCCCCGGCTACACGGCTGCTTTCGTGCAGGGATT
TGGCGTTAAAGAAAGAAATGGCGATACGGAAGAACAGGCTAAACAATATATCGATGAAGTTAGAAGAAGATTGAAAAAAA
ATGTTAATATTGAACTCCTAGGGATCGAAGGTAATCAACCAAATAATAGTCCATTCGTCGGCAACAATATCTTTCAGTAT
AATTATTATTACAACCATATTTTCAATACTCATAGATCCTTAAAACATAGCAATATTAACAGTGAAATTCTTGCTGTTGG
TAATGTTGCGGATTTGTATTATAAACACTACATAAGAAGCACTCCACCGCTTCTTGGCAGCCTTACTATATACGATCCCT
CCTTTCCTAAATTAACCGTTACCGACAATTCCCATGTCATTGGGCAAGTTATTCATCTTTACGAATTAAACTTAGAGAAT
TCTCTTTGGGAGCCTCGTTGGGATTCTGATGTTAGTTATTTGAGTTTATACAATAGCCATATTCGTTTTAATACCAAAAA
TGAAAGCCTTGTTGTAGGCGAAAACCGCATTAGACCAACCCCCGATAATGCCTTGGAGACCGAAAAAGATTTTAAAAGCC
GATTTAGCAATATAGGTTATCATAGTAGCTCGAAAATCATTTCTTATAATAACTCGAGAGACTATGTTCTAGGTTATCCA
AGTATTCGCTTTGCTTATGATTTAAGCGAAAGAGAGGCTGACAAGCCCGTATTAACGTTAAAAAGCAAGGTAAGAGGGAA
AACGGCTATTGTTTTTGAAGAAAAAGCCTTAAACAATTTAAAAAACCTGACTTACCGACAGCTCATCAAAACAGAAACCG
ATATTGAACCAGATGCGTTTTTTCTTTTAGAAGAATATAAAAAAGGCAGATATCGTTTATTTTTGCAACAATGTCCAAAC
GGTTTTTGTATCGGTGTAGAAAAACTCGCAATTCCAACTCATCTTGTCGCCTCCTATGCACAACAAGCCCAAGCCGCCAA
TACCTTATTCGCCTTGCGTTTGAACGACAAAAACAGCGATATTTTTGACCGCACTTTGCCACGCAAAGGCTTGTGGTTGC
GTTTAATTAGCGGTCACTTAAGTCAAGATGTACAAGGTAAAACCGCGCCAGTAGAAGGAAATCGTAAAGGCATACAACTT
GGTGGCGATGTTTTCTCCTTACAGAATCAAGACTACCAATTTTCCTTTGGTTTAATGGGTGGACAAGCAGAACAACGTAG
TACTTTTCGTAATCCAGATACAGGCAATGTTACAACAGGAAGTATGAAAGGCTTTGGCGCAGGCGTTTATGTCACTTGGC
ATCAGCTTCAAGATAAGCAAACAGGGGCATATATTGACAGCTGGGTACAATATCAACGCTTCCGCCACCGCATTAACACT
GAAGATGGCACAGAAAGTTTTACTTCAAAAGGTATCACCGCCTCAATTGAAGCGGGTTACAACGCGTTATTAGCAGAACA
CTTAACGGGGAAAGGCACTCAAATTCGTTTTTACCTACAACCACAGGCACAATTGACTTATTTGGGTGTAAATGGCGGCT
TAACCGATAGTGGTAATAGTAAAGTGAATTTACTTGGCTCTCGCCAATTACAAAGCCGAGTGGGCGTTCAAGCTAAAGCG
CAATTTTTACTCAATAAAAATATCGTCATTCAGCCTTTCGCCGCTGTGAACACGCTTTACCACAGCAAACCGTTCGGCGT
GGAAATAGACGGAGAGCGTCGAGTAATAAACAACAAAACCGCGATTGAAAGCCAATTTGGTATAGCAGTGAAAATCAAAT
CTCACTTAACTTTACAAGCCACATTCAATCGCCAAACAGGCAAACATCACCACGCTAAACAAGGTGCGTTGAATTTACAG
TGGACGTTTTAA

Upstream 100 bases:

>100_bases
GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAGAAGTTTAAAAAATCATTTATTGTAAGTCTATTTTTTTCTA
TTCTTTATACCTCTCCGCTT

Downstream 100 bases:

>100_bases
GCTTAGTAGTAACAAAAAAATCGGCAGGAAAATTTTCTGCCGATTTTTTATTTTAAAAGTGCGGTCATTTTTCGTTTGAT
TTCCACCAATTTTTTACCGC

Product: DNA polymerase III subunit delta'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 722

Protein sequence:

>723_residues
MAVDYVYDKTKLTDDEIIRLKKLRDRNSEYWKDDLFRFDLPNDSGKYFEGKPILRHDIEGAAKGNFLYPILTFSKKTYND
TINPDEKISFFDSPYTPGYTAAFVQGFGVKERNGDTEEQAKQYIDEVRRRLKKNVNIELLGIEGNQPNNSPFVGNNIFQY
NYYYNHIFNTHRSLKHSNINSEILAVGNVADLYYKHYIRSTPPLLGSLTIYDPSFPKLTVTDNSHVIGQVIHLYELNLEN
SLWEPRWDSDVSYLSLYNSHIRFNTKNESLVVGENRIRPTPDNALETEKDFKSRFSNIGYHSSSKIISYNNSRDYVLGYP
SIRFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNLKNLTYRQLIKTETDIEPDAFFLLEEYKKGRYRLFLQQCPN
GFCIGVEKLAIPTHLVASYAQQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQL
GGDVFSLQNQDYQFSFGLMGGQAEQRSTFRNPDTGNVTTGSMKGFGAGVYVTWHQLQDKQTGAYIDSWVQYQRFRHRINT
EDGTESFTSKGITASIEAGYNALLAEHLTGKGTQIRFYLQPQAQLTYLGVNGGLTDSGNSKVNLLGSRQLQSRVGVQAKA
QFLLNKNIVIQPFAAVNTLYHSKPFGVEIDGERRVINNKTAIESQFGIAVKIKSHLTLQATFNRQTGKHHHAKQGALNLQ
WTF

Sequences:

>Translated_723_residues
MAVDYVYDKTKLTDDEIIRLKKLRDRNSEYWKDDLFRFDLPNDSGKYFEGKPILRHDIEGAAKGNFLYPILTFSKKTYND
TINPDEKISFFDSPYTPGYTAAFVQGFGVKERNGDTEEQAKQYIDEVRRRLKKNVNIELLGIEGNQPNNSPFVGNNIFQY
NYYYNHIFNTHRSLKHSNINSEILAVGNVADLYYKHYIRSTPPLLGSLTIYDPSFPKLTVTDNSHVIGQVIHLYELNLEN
SLWEPRWDSDVSYLSLYNSHIRFNTKNESLVVGENRIRPTPDNALETEKDFKSRFSNIGYHSSSKIISYNNSRDYVLGYP
SIRFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNLKNLTYRQLIKTETDIEPDAFFLLEEYKKGRYRLFLQQCPN
GFCIGVEKLAIPTHLVASYAQQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQL
GGDVFSLQNQDYQFSFGLMGGQAEQRSTFRNPDTGNVTTGSMKGFGAGVYVTWHQLQDKQTGAYIDSWVQYQRFRHRINT
EDGTESFTSKGITASIEAGYNALLAEHLTGKGTQIRFYLQPQAQLTYLGVNGGLTDSGNSKVNLLGSRQLQSRVGVQAKA
QFLLNKNIVIQPFAAVNTLYHSKPFGVEIDGERRVINNKTAIESQFGIAVKIKSHLTLQATFNRQTGKHHHAKQGALNLQ
WTF
>Mature_722_residues
AVDYVYDKTKLTDDEIIRLKKLRDRNSEYWKDDLFRFDLPNDSGKYFEGKPILRHDIEGAAKGNFLYPILTFSKKTYNDT
INPDEKISFFDSPYTPGYTAAFVQGFGVKERNGDTEEQAKQYIDEVRRRLKKNVNIELLGIEGNQPNNSPFVGNNIFQYN
YYYNHIFNTHRSLKHSNINSEILAVGNVADLYYKHYIRSTPPLLGSLTIYDPSFPKLTVTDNSHVIGQVIHLYELNLENS
LWEPRWDSDVSYLSLYNSHIRFNTKNESLVVGENRIRPTPDNALETEKDFKSRFSNIGYHSSSKIISYNNSRDYVLGYPS
IRFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNLKNLTYRQLIKTETDIEPDAFFLLEEYKKGRYRLFLQQCPNG
FCIGVEKLAIPTHLVASYAQQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQLG
GDVFSLQNQDYQFSFGLMGGQAEQRSTFRNPDTGNVTTGSMKGFGAGVYVTWHQLQDKQTGAYIDSWVQYQRFRHRINTE
DGTESFTSKGITASIEAGYNALLAEHLTGKGTQIRFYLQPQAQLTYLGVNGGLTDSGNSKVNLLGSRQLQSRVGVQAKAQ
FLLNKNIVIQPFAAVNTLYHSKPFGVEIDGERRVINNKTAIESQFGIAVKIKSHLTLQATFNRQTGKHHHAKQGALNLQW
TF

Specific function: Unknown

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI1788565, Length=315, Percent_Identity=26.984126984127, Blast_Score=94, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899 [H]

Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 82346; Mature: 82214

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDYVYDKTKLTDDEIIRLKKLRDRNSEYWKDDLFRFDLPNDSGKYFEGKPILRHDIEG
CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEECCCCCHHHCCCC
AAKGNFLYPILTFSKKTYNDTINPDEKISFFDSPYTPGYTAAFVQGFGVKERNGDTEEQA
CCCCCEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHH
KQYIDEVRRRLKKNVNIELLGIEGNQPNNSPFVGNNIFQYNYYYNHIFNTHRSLKHSNIN
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCCCCC
SEILAVGNVADLYYKHYIRSTPPLLGSLTIYDPSFPKLTVTDNSHVIGQVIHLYELNLEN
CEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCHHHHHEEEEEEECCCC
SLWEPRWDSDVSYLSLYNSHIRFNTKNESLVVGENRIRPTPDNALETEKDFKSRFSNIGY
CCCCCCCCCCCHHEEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
HSSSKIISYNNSRDYVLGYPSIRFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNL
CCCCCEEEECCCCCEEEECCCEEEEEECCHHCCCCCEEEEHHHCCCCEEEEEEHHHHHHH
KNLTYRQLIKTETDIEPDAFFLLEEYKKGRYRLFLQQCPNGFCIGVEKLAIPTHLVASYA
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHCCCCEEEEHHHHHHHHHHHHHHH
QQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQL
HHHHHCCEEEEEEECCCCCCHHHHCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCEEE
GGDVFSLQNQDYQFSFGLMGGQAEQRSTFRNPDTGNVTTGSMKGFGAGVYVTWHQLQDKQ
CCEEEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCEEECCCCCCCCEEEEEEEECCCCC
TGAYIDSWVQYQRFRHRINTEDGTESFTSKGITASIEAGYNALLAEHLTGKGTQIRFYLQ
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEEEEEC
PQAQLTYLGVNGGLTDSGNSKVNLLGSRQLQSRVGVQAKAQFLLNKNIVIQPFAAVNTLY
CCCEEEEEEECCCCCCCCCCEEEEEECHHHHHHCCCHHEEHHHCCCCEEEECHHHHHHHH
HSKPFGVEIDGERRVINNKTAIESQFGIAVKIKSHLTLQATFNRQTGKHHHAKQGALNLQ
CCCCCCEEECCCCEEECCCHHHHCCCCEEEEEECCEEEEEEECCCCCCCCHHHCCCEEEE
WTF
EEC
>Mature Secondary Structure 
AVDYVYDKTKLTDDEIIRLKKLRDRNSEYWKDDLFRFDLPNDSGKYFEGKPILRHDIEG
CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEECCCCCHHHCCCC
AAKGNFLYPILTFSKKTYNDTINPDEKISFFDSPYTPGYTAAFVQGFGVKERNGDTEEQA
CCCCCEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHH
KQYIDEVRRRLKKNVNIELLGIEGNQPNNSPFVGNNIFQYNYYYNHIFNTHRSLKHSNIN
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHCCCCC
SEILAVGNVADLYYKHYIRSTPPLLGSLTIYDPSFPKLTVTDNSHVIGQVIHLYELNLEN
CEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCHHHHHEEEEEEECCCC
SLWEPRWDSDVSYLSLYNSHIRFNTKNESLVVGENRIRPTPDNALETEKDFKSRFSNIGY
CCCCCCCCCCCHHEEEECCEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
HSSSKIISYNNSRDYVLGYPSIRFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNL
CCCCCEEEECCCCCEEEECCCEEEEEECCHHCCCCCEEEEHHHCCCCEEEEEEHHHHHHH
KNLTYRQLIKTETDIEPDAFFLLEEYKKGRYRLFLQQCPNGFCIGVEKLAIPTHLVASYA
HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEHHHCCCCEEEEHHHHHHHHHHHHHHH
QQAQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQL
HHHHHCCEEEEEEECCCCCCHHHHCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCEEE
GGDVFSLQNQDYQFSFGLMGGQAEQRSTFRNPDTGNVTTGSMKGFGAGVYVTWHQLQDKQ
CCEEEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCEEECCCCCCCCEEEEEEEECCCCC
TGAYIDSWVQYQRFRHRINTEDGTESFTSKGITASIEAGYNALLAEHLTGKGTQIRFYLQ
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEEEEEC
PQAQLTYLGVNGGLTDSGNSKVNLLGSRQLQSRVGVQAKAQFLLNKNIVIQPFAAVNTLY
CCCEEEEEEECCCCCCCCCCEEEEEECHHHHHHCCCHHEEHHHCCCCEEEECHHHHHHHH
HSKPFGVEIDGERRVINNKTAIESQFGIAVKIKSHLTLQATFNRQTGKHHHAKQGALNLQ
CCCCCCEEECCCCEEECCCHHHHCCCCEEEEEECCEEEEEEECCCCCCCCHHHCCCEEEE
WTF
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]