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The map label for this gene is ycfH [C]

Identifier: 148827649

GI number: 148827649

Start: 999210

End: 999992

Strand: Reverse

Name: ycfH [C]

Synonym: CGSHiGG_05500

Alternate gene names: 148827649

Gene position: 999992-999210 (Counterclockwise)

Preceding gene: 148827650

Following gene: 148827648

Centisome position: 52.99

GC content: 41.12

Gene sequence:

>783_bases
ATGTTTATTGTTGATTCTCACTGTCATTTAGATGCGTTGGATTATGAAAATTTACACAAAAATATCGCAGATGTGGTGGA
AAAAGCGTGCGCACGTGATGTGAAACATTTGCTCGCCATTGGTGTAACCTTAAGCCGCTTTGAGCAGGCTTATGACTCTT
TACGCGAATTTAATAATGTCTCCCTTGCTTGTGGTGTGCATCCACTGGATTTTGAAGAAGAACCTTATGACGCAGAACGC
TTATTGCGTTTGGCGCAAGATCCGAAAGTGATTGCTATTGGCGAAATTGGCTTAGATTATTATTACAGCTCAGACAATAA
AGCGGCACAACAAGCGGTGTTTGGTAGCCAAATCGATATTGCAAACCAATTAGATAAGCCTGTAATTATTCATACACGTT
CGGCAGGCGATGACACCATTGCAATGTTACGCCAACACCATGCTGAAAAGTGCGGTGGCGTTATTCATTGTTTTACGGAA
ACCATGGAATTTGCGAAAAAAGCGTTGGATTTAGGTTTTTACATTTCTTGTTCTGGCATTGTGACCTTTAAAAATGCCGA
AGCGATTCGTGAGGTTATTCGTTATGTACCAATGGATCGCTTATTGGTGGAAACGGATTCGCCTTATCTTGCGCCAGTGC
CTTATCGAGGAAAAGAAAATCAACCCGCTTATACGAGAGAAGTCTGTGAATACGTGGCAATCTTAAAGGGCGTTTCTGCC
GAGGCGTTTGCTCAAATCACTACAAAAAATTTCGAGCGTTTATTTAAAATTCGTGTAGAATAA

Upstream 100 bases:

>100_bases
ATGTTGAATTAATGCTATTAGATGGCTTGACCAGATTAGTTACAGAAGTGTTTAAGGGTTAATTATCAATTTACCCAAGG
TACAAATTAGGAAAATAATT

Downstream 100 bases:

>100_bases
ATGCACAGTTCTGACAAGGGAAAAGTATGCGAAAGTTTTTTAAATATTTCTTATTTATTGTTGTTTTTTTATTCCACGGT
TTTATGTTTTCTGTGGTGAA

Product: fused fructose-specific PTS enzymes: IIA component/HPr component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKACARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEEPYDAER
LLRLAQDPKVIAIGEIGLDYYYSSDNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMDRLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAILKGVSA
EAFAQITTKNFERLFKIRVE

Sequences:

>Translated_260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKACARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEEPYDAER
LLRLAQDPKVIAIGEIGLDYYYSSDNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMDRLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAILKGVSA
EAFAQITTKNFERLFKIRVE
>Mature_260_residues
MFIVDSHCHLDALDYENLHKNIADVVEKACARDVKHLLAIGVTLSRFEQAYDSLREFNNVSLACGVHPLDFEEEPYDAER
LLRLAQDPKVIAIGEIGLDYYYSSDNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHHAEKCGGVIHCFTE
TMEFAKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMDRLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAILKGVSA
EAFAQITTKNFERLFKIRVE

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=273, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI110349734, Length=273, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI226061853, Length=279, Percent_Identity=30.1075268817204, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=30.5343511450382, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=29.3103448275862, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI225903424, Length=219, Percent_Identity=26.9406392694064, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI14042943, Length=198, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI225903439, Length=153, Percent_Identity=32.6797385620915, Blast_Score=78, Evalue=7e-15,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=60.7003891050584, Blast_Score=324, Evalue=3e-90,
Organism=Escherichia coli, GI48994985, Length=253, Percent_Identity=33.201581027668, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=27.5193798449612, Blast_Score=111, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=273, Percent_Identity=28.5714285714286, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=29.0566037735849, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=302, Percent_Identity=24.1721854304636, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648690, Length=219, Percent_Identity=31.5068493150685, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24586117, Length=205, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221330018, Length=205, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29324; Mature: 29324

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIVDSHCHLDALDYENLHKNIADVVEKACARDVKHLLAIGVTLSRFEQAYDSLREFNNV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLACGVHPLDFEEEPYDAERLLRLAQDPKVIAIGEIGLDYYYSSDNKAAQQAVFGSQIDI
EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHCCCCCH
ANQLDKPVIIHTRSAGDDTIAMLRQHHAEKCGGVIHCFTETMEFAKKALDLGFYISCSGI
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCE
VTFKNAEAIREVIRYVPMDRLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAILKGVSA
EEECCHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
EAFAQITTKNFERLFKIRVE
HHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MFIVDSHCHLDALDYENLHKNIADVVEKACARDVKHLLAIGVTLSRFEQAYDSLREFNNV
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLACGVHPLDFEEEPYDAERLLRLAQDPKVIAIGEIGLDYYYSSDNKAAQQAVFGSQIDI
EEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHCCCCCH
ANQLDKPVIIHTRSAGDDTIAMLRQHHAEKCGGVIHCFTETMEFAKKALDLGFYISCSGI
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCE
VTFKNAEAIREVIRYVPMDRLLVETDSPYLAPVPYRGKENQPAYTREVCEYVAILKGVSA
EEECCHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
EAFAQITTKNFERLFKIRVE
HHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]