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The map label for this gene is ycfD [C]

Identifier: 148827598

GI number: 148827598

Start: 941111

End: 942325

Strand: Direct

Name: ycfD [C]

Synonym: CGSHiGG_05155

Alternate gene names: 148827598

Gene position: 941111-942325 (Clockwise)

Preceding gene: 148827597

Following gene: 148827599

Centisome position: 49.87

GC content: 38.77

Gene sequence:

>1215_bases
ATGACCGCACTTTCATCTGTTAATTTTTGTTTACCTGAACATATCACGCCAGAAATTTTTCTACGTGATTATTGGCAGAA
AAAGCCACTTGTGATTCGTAACGGTTTGCCTGAAATTGTTGGGCAGTTTGAGCCACAAGATATTATTGAGCTCGCTCAAA
ATGAAGATGTCACCGCTCGTTTAGTGAAGACATTTTCTGATGATGATTGGAAAGTTTTTTTTAGCCCTTTAAGCGAAAAG
GATTTCCAACAATTGCCAGAAAAATGGTCGGTGTTAGTTCAAAATTTGGAGCAATGGTCGCCTGAATTAGGACAACTTTG
GAATAAATTTGGCTTTATTCCTCAATGGCAACGTGATGATATTATGGTGTCTTACGCGCCGAAAGGTGGCTCTGTCGGTA
AGCATTATGATGAATATGATGTATTTTTAGTGCAAGGCTATGGCCATCGTCGTTGGCAAGTGGGTAAATGGTGTGATGCA
AGCACTGAATTTAAACCCAATCAATCGATCCGAATTTTTGATGATATGGGCGAATTAGTCATTGATGAAGTGATGAATCC
AGGGGATATTCTCTATATTCCAGCCCGTATGGCGCATTATGGCGTGGCTGAAGATGATTGTTTAACCTTTTCTTTTGGCT
TGCGTTATCCAAATTTAAGCAATTTGATTGATAGCGTAAGCAAAGGTTTCTGTCATCAAGATCCTGATTTGAATTTAAGT
GAATTTGATTTGCCGCTACGTTTAAGCCAGTCTGAACAACGTACAGGTAAACTTGCGGATGAAAATATTCAAGCGATGAA
ACAGCTTTTATTAGATAAATTGGCTCATTCAGAAGCTTTTGATACGTTATTTAAACAAGCAGCGGCGAGTGCGGTAAGTT
CTCGTCGTTATGAGTTATTAGTCTCTGATGAAATGTGCGATCCTGATGAAGTGCGGTCAATTTTAGAAGAAGATGGCGCA
TTCCTTTCTCAAGACAACAATTGTAAATTGCTTTACACCGAAAATCCGTTGCGAATTTATGCGAACGGCGAATGGTTAGA
TGAACTTAATATAATTGAGAGCGAAGTATTAAAACGCTTGTCTGACGGCGAAAGTTTAGATTGGGTATTTCTATCTAATT
TAGTGAATGAAACCGAAGATCCCGAAACTTCAATGGATTTGTTGTTGGATTCCATTTGTAACTGGGTTGATGATGGGTGG
GCGTTAATTGAATAA

Upstream 100 bases:

>100_bases
TTGAAATTTATCGTCCATTACTTGCTGATCCGAAAGAAATTCGCCGTAAGCGTGCAGCAGAACAAGCTGCAGCCAAAGAC
AAAGAAAAAGGAGCTTAAAA

Downstream 100 bases:

>100_bases
TATGTCAGACAATATTTATTCCGTCTCTCAACTGAATTCTGCCGCGCGTCAGATGTTGGAGGGGCATTTTTCCCAAATTT
GGCTAACGGGGGAAATTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTALSSVNFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEK
DFQQLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDA
STEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDSVSKGFCHQDPDLNLS
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAAASAVSSRRYELLVSDEMCDPDEVRSILEEDGA
FLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWVFLSNLVNETEDPETSMDLLLDSICNWVDDGW
ALIE

Sequences:

>Translated_404_residues
MTALSSVNFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEK
DFQQLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDA
STEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDSVSKGFCHQDPDLNLS
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAAASAVSSRRYELLVSDEMCDPDEVRSILEEDGA
FLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWVFLSNLVNETEDPETSMDLLLDSICNWVDDGW
ALIE
>Mature_403_residues
TALSSVNFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTARLVKTFSDDDWKVFFSPLSEKD
FQQLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDDIMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDAS
TEFKPNQSIRIFDDMGELVIDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDSVSKGFCHQDPDLNLSE
FDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAAASAVSSRRYELLVSDEMCDPDEVRSILEEDGAF
LSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRLSDGESLDWVFLSNLVNETEDPETSMDLLLDSICNWVDDGWA
LIE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=332, Percent_Identity=31.3253012048193, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 46463; Mature: 46331

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALSSVNFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTAR
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCHHHH
LVKTFSDDDWKVFFSPLSEKDFQQLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDD
HHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
IMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDASTEFKPNQSIRIFDDMGELV
EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHH
IDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDSVSKGFCHQDPDLNLS
HHHHCCCCCEEEECHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAAASAVSSRRYELL
HCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VSDEMCDPDEVRSILEEDGAFLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRL
EECCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHH
SDGESLDWVFLSNLVNETEDPETSMDLLLDSICNWVDDGWALIE
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
TALSSVNFCLPEHITPEIFLRDYWQKKPLVIRNGLPEIVGQFEPQDIIELAQNEDVTAR
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHCCCCHHHH
LVKTFSDDDWKVFFSPLSEKDFQQLPEKWSVLVQNLEQWSPELGQLWNKFGFIPQWQRDD
HHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC
IMVSYAPKGGSVGKHYDEYDVFLVQGYGHRRWQVGKWCDASTEFKPNQSIRIFDDMGELV
EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHH
IDEVMNPGDILYIPARMAHYGVAEDDCLTFSFGLRYPNLSNLIDSVSKGFCHQDPDLNLS
HHHHCCCCCEEEECHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHH
EFDLPLRLSQSEQRTGKLADENIQAMKQLLLDKLAHSEAFDTLFKQAAASAVSSRRYELL
HCCCCEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
VSDEMCDPDEVRSILEEDGAFLSQDNNCKLLYTENPLRIYANGEWLDELNIIESEVLKRL
EECCCCCHHHHHHHHHHCCCEECCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHH
SDGESLDWVFLSNLVNETEDPETSMDLLLDSICNWVDDGWALIE
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]