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The map label for this gene is rnfH

Identifier: 148827597

GI number: 148827597

Start: 940800

End: 941108

Strand: Direct

Name: rnfH

Synonym: CGSHiGG_05150

Alternate gene names: 148827597

Gene position: 940800-941108 (Clockwise)

Preceding gene: 148827593

Following gene: 148827598

Centisome position: 49.85

GC content: 37.54

Gene sequence:

>309_bases
ATGAATCAGATTAACATTGAAATCGCTTATGCTTTTCCCGAACGTTATTATTTGAAATCTTTTCAAGTTGATGAAGGAAT
CACCGTGCAAACGGCGATTACGCAATCAGGGATTTTAAGCCAATTTCCAGAGATTGATTTGAGCACAAATAAAATTGGGA
TTTTCAGTCGTCCAATAAAATTGACTGATGTATTAAAAGAGGGCGATCGTATTGAAATTTATCGTCCATTACTTGCTGAT
CCGAAAGAAATTCGCCGTAAGCGTGCAGCAGAACAAGCTGCAGCCAAAGACAAAGAAAAAGGAGCTTAA

Upstream 100 bases:

>100_bases
AGGCGGAAACAAAGAGGTAATTTATTGCTCGTGATTTATCATTAAAAGTCACCGCACTTTTCCGTTATAATGGCTAAAAT
TTTTTAACAAAGAAGTAAAA

Downstream 100 bases:

>100_bases
AAATGACCGCACTTTCATCTGTTAATTTTTGTTTACCTGAACATATCACGCCAGAAATTTTTCTACGTGATTATTGGCAG
AAAAAGCCACTTGTGATTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLAD
PKEIRRKRAAEQAAAKDKEKGA

Sequences:

>Translated_102_residues
MNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLAD
PKEIRRKRAAEQAAAKDKEKGA
>Mature_102_residues
MNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLAD
PKEIRRKRAAEQAAAKDKEKGA

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=92, Percent_Identity=54.3478260869565, Blast_Score=111, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_HAEI8 (Q4QNE7)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248110.1
- PDB:   2HJ1
- PDBsum:   2HJ1
- ProteinModelPortal:   Q4QNE7
- SMR:   Q4QNE7
- STRING:   Q4QNE7
- GeneID:   3429834
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI0516
- eggNOG:   COG2914
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- PhylomeDB:   Q4QNE7
- ProtClustDB:   PRK01777
- BioCyc:   HINF281310:NTHI0516-MONOMER
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 11584; Mature: 11584

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK
CCEEEEEEEEECCCCHHHHEECCCCCCEEEEECCCCCHHHCCCCCCCCCCCEEEEECCCH
LTDVLKEGDRIEIYRPLLADPKEIRRKRAAEQAAAKDKEKGA
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK
CCEEEEEEEEECCCCHHHHEECCCCCCEEEEECCCCCHHHCCCCCCCCCCCEEEEECCCH
LTDVLKEGDRIEIYRPLLADPKEIRRKRAAEQAAAKDKEKGA
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA