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The map label for this gene is ybbI [C]

Identifier: 148827447

GI number: 148827447

Start: 806857

End: 807243

Strand: Direct

Name: ybbI [C]

Synonym: CGSHiGG_04280

Alternate gene names: 148827447

Gene position: 806857-807243 (Clockwise)

Preceding gene: 148827440

Following gene: 148827449

Centisome position: 42.75

GC content: 36.69

Gene sequence:

>387_bases
ATGAATATTAGTGAAGCCGCAAAATTAGTAGGTTTATCTACAAAACAAATCCGTGATTATGAAAAAATAGGGTTAATTAA
ACCCGCTGTTCGCAGTTTGTCAGGCTATCGAAATTATGGAGAAAGTGATTTAGAAAGGTTGCATTTTATTCGACACTCAC
GCAATGTTGGGTTTTCGTTACATCAAATCGCACAATTATTAGCACTACAAGATAATCCTAAGCGTAGCTGCCGAGAAGTG
AAAGTGCTAACTGCTCAACATATTGCGACATTAAATCAACAAATAGAACAGTTACAAAAAATGGTACAAAAATTGCAGCA
CTGGCACGACAGTTGTCAGGGCAATGACAACCCTGAATGTTTAATTTTGAATGGCTTGAACGGATAA

Upstream 100 bases:

>100_bases
TATGTTTAATGTGATAGTTTTCATTTTTACTCCTTGTTAGTTGTTTTATTGATGGTTAAACTATAAACCTTTACATAAGG
TTAAGGTCAAGAAGTTTTTT

Downstream 100 bases:

>100_bases
GTGAAAAGTGCGGTTAATATTCCCAGCTTTCTGGATCGACACCTAATTCACGCATAAGCACTTTGGCATCTTCAGGGATT
TCATCATTACGCTCTTTCAT

Product: transcriptional regulator MerR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNISEAAKLVGLSTKQIRDYEKIGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG

Sequences:

>Translated_128_residues
MNISEAAKLVGLSTKQIRDYEKIGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG
>Mature_128_residues
MNISEAAKLVGLSTKQIRDYEKIGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSLHQIAQLLALQDNPKRSCREV
KVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPECLILNGLNG

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290 [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=128, Percent_Identity=39.84375, Blast_Score=107, Evalue=3e-25,
Organism=Escherichia coli, GI1789687, Length=129, Percent_Identity=37.984496124031, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 14571; Mature: 14571

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISEAAKLVGLSTKQIRDYEKIGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSL
CCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HQIAQLLALQDNPKRSCREVKVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPEC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LILNGLNG
EEEECCCC
>Mature Secondary Structure
MNISEAAKLVGLSTKQIRDYEKIGLIKPAVRSLSGYRNYGESDLERLHFIRHSRNVGFSL
CCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HQIAQLLALQDNPKRSCREVKVLTAQHIATLNQQIEQLQKMVQKLQHWHDSCQGNDNPEC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LILNGLNG
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]