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The map label for this gene is exbD

Identifier: 148827395

GI number: 148827395

Start: 751416

End: 751859

Strand: Reverse

Name: exbD

Synonym: CGSHiGG_03955

Alternate gene names: 148827395

Gene position: 751859-751416 (Counterclockwise)

Preceding gene: 148827396

Following gene: 148827394

Centisome position: 39.84

GC content: 34.46

Gene sequence:

>444_bases
GTGAAAAAATTCGATGAAATCAACATTATCCCTTTCATTGATATTATGTTGGTGCTACTTACTGTGGTGCTTATTACTGC
ATCTTTTATCTCTCAAGGTAAAATTCAAGTAAATGTACCAAAAGCTAGTACAGCGGTCGCATTTAAATCTGACGAGCTAG
CTAAATTATTGACAGTGACAGCGGATAAACAACTCTATTTTAATGATAAACCTATTTCTCAAGAAGCTCTAGAGGCAGAA
ATTGCTCAATGGAATAAAGATCAGAAAGTAACTTTAAAAATTGATGCCGAAGCCTCTTTCCAAGATTTTGTGACGATTAC
AGATATGCTTTCTAAAAATGAAATCAAAAATGTGGCAATTGTTTCTATGAAAGATAAGGGAAAAAGTGCGGGTAAAAATT
CTCAAGAATCTACTCCTTCCCAATCTGTACCAACTACGCCGTAA

Upstream 100 bases:

>100_bases
TATTCCCTCTATGGTGTTTTATAACGGTTTGGGGCGTAAAGTTGAAGTTAATCGTTTAAAATGGAAAGTATTAAGCGAAC
AAAAAGATAAGGAATAATTC

Downstream 100 bases:

>100_bases
GGAATAATTATGCAGCAAACAAAACGTTCGCTATTGGGTTTGCTTATTTCTTTGATCGCACACGGTATTGTTATAGGATT
TATCTTATGGAATTGGAATG

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDKPISQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP

Sequences:

>Translated_147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDKPISQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP
>Mature_147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDKPISQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EXBD_HAEIN (P43009)

Other databases:

- EMBL:   U08209
- EMBL:   L42023
- PIR:   G64057
- RefSeq:   NP_438421.1
- ProteinModelPortal:   P43009
- GeneID:   949375
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0252
- NMPDR:   fig|71421.1.peg.237
- TIGR:   HI_0252
- HOGENOM:   HBG729503
- OMA:   DKEQKVT
- ProtClustDB:   CLSK870389
- BioCyc:   HINF71421:HI_0252-MONOMER
- InterPro:   IPR003400
- InterPro:   IPR014171
- TIGRFAMs:   TIGR02804

Pfam domain/function: PF02472 ExbD

EC number: NA

Molecular weight: Translated: 16178; Mature: 16178

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc5e3dbc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHEE
ADKQLYFNDKPISQEALEAEIAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAI
CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VSMKDKGKSAGKNSQESTPSQSVPTTP
EEECCCCCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHEE
ADKQLYFNDKPISQEALEAEIAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAI
CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VSMKDKGKSAGKNSQESTPSQSVPTTP
EEECCCCCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7828935; 7542800