Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 148827315

GI number: 148827315

Start: 646740

End: 647528

Strand: Direct

Name: yfiO [C]

Synonym: CGSHiGG_03480

Alternate gene names: 148827315

Gene position: 646740-647528 (Clockwise)

Preceding gene: 148827312

Following gene: 148827321

Centisome position: 34.27

GC content: 36.5

Gene sequence:

>789_bases
ATGCGTAAAATAAAATCTTTGGCGTTGCTTGCCGTGGCAGCATTGGTTATTGGATGTTCAAGTGGTTCAAAAGATGTTGA
ACAAGCATCGGTAAATGAATTATACACAAAAGGTACAACATCATTACAAGAAGGTAGCTACTCTGAAGCCATTCGCTATT
TAAAAGCGACGACTGAACGTTTCCCTGGTAGTATTTATCAAGAACAAGCAATGTTAGATTTAATTTATGCAAATTATAAA
ACACAAGATTATACGCAAGTGTTATTGACGGTAGATAGCTTTTTACATCAATTTCCACAAAGCCCAAATCAAGCCTATGC
GGTATATATGGCTGGCTTAACTAATGCAGCAACAGGCGATAATGTTATCCAAGATTTTTTTGGAATTGACCGTGCAACAC
GTGAAACAACCTCTATGCGTACCGCTTTTTCTAATTTCCAAAACTTAGTTCGTGCATTCCCTAATAGCCCTTACTCACAA
GATGCTTTAGCTCGTATGGCTTATATTAAAGATGCACTAGCTCGTCACGAATTAGAGATTGCCAAATTCTATACAAAACG
TAAAGCGTGGGTAGCAGTTGCAAATCGTGTGGTAGGAATGTTAAAACAATATCCTGATACTAAAGCAACTTATGAAGGAT
TATTTCTGATGCAGGAAGCTTATGAAAAAATGGGTTTAACCGCATTAGCAAATGATACTCAAAAAATTATTGATGCGAAT
AAAGATAAAACTTTTGCACCAATTGAAAAACCAAACGAGCCAGACTTAAAAGTGCCAGCAGTAAAATAG

Upstream 100 bases:

>100_bases
TCTCAAAAATTTTAAAAGTTGGCTTATTGATTAATGTTCTATACAATAGCGGACAATTGTATCTTATTTATTGGTTTTCG
TAAAAATTAAGGAAAAAACA

Downstream 100 bases:

>100_bases
CAATAACTGCAGAAAAATCGAATACTCTCTGCACCCTAAAAGTTGAATAAAATTTAAACTAATTAAGGTGCAGATTTTTT
TATTTTTTATCAACTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSIYQEQAMLDLIYANYK
TQDYTQVLLTVDSFLHQFPQSPNQAYAVYMAGLTNAATGDNVIQDFFGIDRATRETTSMRTAFSNFQNLVRAFPNSPYSQ
DALARMAYIKDALARHELEIAKFYTKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK

Sequences:

>Translated_262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSIYQEQAMLDLIYANYK
TQDYTQVLLTVDSFLHQFPQSPNQAYAVYMAGLTNAATGDNVIQDFFGIDRATRETTSMRTAFSNFQNLVRAFPNSPYSQ
DALARMAYIKDALARHELEIAKFYTKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK
>Mature_262_residues
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTERFPGSIYQEQAMLDLIYANYK
TQDYTQVLLTVDSFLHQFPQSPNQAYAVYMAGLTNAATGDNVIQDFFGIDRATRETTSMRTAFSNFQNLVRAFPNSPYSQ
DALARMAYIKDALARHELEIAKFYTKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
KDKTFAPIEKPNEPDLKVPAVK

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=245, Percent_Identity=44.0816326530612, Blast_Score=214, Evalue=5e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29282; Mature: 29282

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTER
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
FPGSIYQEQAMLDLIYANYKTQDYTQVLLTVDSFLHQFPQSPNQAYAVYMAGLTNAATGD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCH
NVIQDFFGIDRATRETTSMRTAFSNFQNLVRAFPNSPYSQDALARMAYIKDALARHELEI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AKFYTKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
KDKTFAPIEKPNEPDLKVPAVK
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKIKSLALLAVAALVIGCSSGSKDVEQASVNELYTKGTTSLQEGSYSEAIRYLKATTER
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
FPGSIYQEQAMLDLIYANYKTQDYTQVLLTVDSFLHQFPQSPNQAYAVYMAGLTNAATGD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCH
NVIQDFFGIDRATRETTSMRTAFSNFQNLVRAFPNSPYSQDALARMAYIKDALARHELEI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AKFYTKRKAWVAVANRVVGMLKQYPDTKATYEGLFLMQEAYEKMGLTALANDTQKIIDAN
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
KDKTFAPIEKPNEPDLKVPAVK
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]