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The map label for this gene is citD [H]

Identifier: 148827182

GI number: 148827182

Start: 479309

End: 479596

Strand: Reverse

Name: citD [H]

Synonym: CGSHiGG_02605

Alternate gene names: 148827182

Gene position: 479596-479309 (Counterclockwise)

Preceding gene: 148827183

Following gene: 148827181

Centisome position: 25.41

GC content: 40.97

Gene sequence:

>288_bases
ATGAAAATAACAAAAGTAGCCGTTGCAGGGACACTGGAATCCAGTGATGTTCAAGTACGGGTTCAACCTTTTGATTCACT
CGATATTGAAATCAATAGCTCAGTAGCAAAACAATTTGGTGAACAAATTGAAGCGACAGTTCGTGAAGTATTAGCAAAAC
TTGGCATTACAGCAGCACAAGTCATTGTAGAAGACAAAGGGGCGTTAGATTGCGTGTTACAAGCTCGAGTAAAAGCTGCT
GCAATGCGTGCAACTGATGAAATGATTAACTGGGAGGCTGTGTTATGA

Upstream 100 bases:

>100_bases
CAACTCGCAGAGTTTGTGCCTATGACTACGTTAAATTATTTACAAAAGTGCGGTCGTTTTTAAATACATTTTTATTCATC
AATATACGGAAGGAAAATCT

Downstream 100 bases:

>100_bases
AATTAAGAAGAAGTATGTTATTTGTGCCAGGCTCAAATGCCGCCATGTTAAGTAATAGCTTTATTTATAAACCAGATTCC
ATTATGTTTGACTTAGAAGA

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKITKVAVAGTLESSDVQVRVQPFDSLDIEINSSVAKQFGEQIEATVREVLAKLGITAAQVIVEDKGALDCVLQARVKAA
AMRATDEMINWEAVL

Sequences:

>Translated_95_residues
MKITKVAVAGTLESSDVQVRVQPFDSLDIEINSSVAKQFGEQIEATVREVLAKLGITAAQVIVEDKGALDCVLQARVKAA
AMRATDEMINWEAVL
>Mature_95_residues
MKITKVAVAGTLESSDVQVRVQPFDSLDIEINSSVAKQFGEQIEATVREVLAKLGITAAQVIVEDKGALDCVLQARVKAA
AMRATDEMINWEAVL

Specific function: Covalent carrier of the coenzyme of citrate lyase [H]

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family [H]

Homologues:

Organism=Escherichia coli, GI1786834, Length=95, Percent_Identity=50.5263157894737, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006495
- InterPro:   IPR009662
- ProDom:   PD015389 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: 4.1.3.6

Molecular weight: Translated: 10244; Mature: 10244

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITKVAVAGTLESSDVQVRVQPFDSLDIEINSSVAKQFGEQIEATVREVLAKLGITAAQ
CCCEEEEEEECCCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VIVEDKGALDCVLQARVKAAAMRATDEMINWEAVL
EEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure
MKITKVAVAGTLESSDVQVRVQPFDSLDIEINSSVAKQFGEQIEATVREVLAKLGITAAQ
CCCEEEEEEECCCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VIVEDKGALDCVLQARVKAAAMRATDEMINWEAVL
EEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA