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The map label for this gene is yrdD [C]

Identifier: 148826707

GI number: 148826707

Start: 1760097

End: 1760633

Strand: Direct

Name: yrdD [C]

Synonym: CGSHiEE_08910

Alternate gene names: 148826707

Gene position: 1760097-1760633 (Clockwise)

Preceding gene: 148826706

Following gene: 148826708

Centisome position: 97.08

GC content: 38.55

Gene sequence:

>537_bases
ATGAATCAAAGCCTTTTTCATCATAGCAAACAACAGGAATATTGCCCTCAATGTGGTGCGCCTTTGCAAATTAAACAAGG
CAAAAAAGGGCTGTTTTTAGGTTGCTCTGCTTATCCTGAATGTGATTATTTGCGTCCTTTGCAACGATCGGAGCATAAAG
TATTAAAAACACTTGATGAAATTTGCCCGAAGTGCGGTAATTTATTGCAGTTGAAACAAGGCAGTTTTGGGATGTTTATT
GGTTGTAGCCATTATCCTGAATGCGATTTTGTGGTGCGAGAAGAATCTGAGACTGAGGAAAAAATTGCTTGTCCTGAATG
TAAAACGGGGTATTTGATTTCTCGTCGTGGTCGCCAAGGAAAAATTTTTTACGGCTGTGATAATTTCCCTAAATGTAAAT
TTTCTTTGCCTGCCAAGCCTTATTCCGTGCCTTGTCCAAGGTGCCATTTCCCACTTTCTTTGTTAAAAAGTGAAGATGGG
GAAAAACAAATTTTCCAGTGTGCAAATAAAACTTGCCGTCATATTTTTGAGCAATAA

Upstream 100 bases:

>100_bases
TCAACAAGTGGATGTGAAGAAAGCATTAGATGATGTGGAAACGGAATGGATAACCGCACAGGAAGAATTGGAAGAAATGC
TTCAAGCATAAGGATAGATT

Downstream 100 bases:

>100_bases
AAGTAAAAGAGTTAAATGAATAGAGAACAAATCGCCAACGCACTTCGACAAAATCAAGTGGTCGCTTATCCCACTGAAGC
TGTGTTTGGCTTGGGCTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESETEEKIACPECKTGYLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPRCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ

Sequences:

>Translated_178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESETEEKIACPECKTGYLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPRCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ
>Mature_178_residues
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFI
GCSHYPECDFVVREESETEEKIACPECKTGYLISRRGRQGKIFYGCDNFPKCKFSLPAKPYSVPCPRCHFPLSLLKSEDG
EKQIFQCANKTCRHIFEQ

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yrdD [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=174, Percent_Identity=45.9770114942529, Blast_Score=163, Evalue=7e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20370; Mature: 20370

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDE
CCCCHHCCCHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCHHCHHHHHHHHHHHHHHH
ICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESETEEKIACPECKTGYLISRRGRQG
HHHHHCCEEEECCCCCEEEEECCCCCCCCEEEECCCCCCHHCCCCCCCCCCEEECCCCCC
KIFYGCDNFPKCKFSLPAKPYSVPCPRCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ
CEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDE
CCCCHHCCCHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCHHCHHHHHHHHHHHHHHH
ICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESETEEKIACPECKTGYLISRRGRQG
HHHHHCCEEEECCCCCEEEEECCCCCCCCEEEECCCCCCHHCCCCCCCCCCEEECCCCCC
KIFYGCDNFPKCKFSLPAKPYSVPCPRCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ
CEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]