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The map label for this gene is oppB [H]

Identifier: 148826263

GI number: 148826263

Start: 1276567

End: 1277487

Strand: Direct

Name: oppB [H]

Synonym: CGSHiEE_06430

Alternate gene names: 148826263

Gene position: 1276567-1277487 (Clockwise)

Preceding gene: 148826262

Following gene: 148826264

Centisome position: 70.41

GC content: 41.15

Gene sequence:

>921_bases
ATGCTCAAGTTTATTTTTAAACGGCTGTTGGAAGCCTTGCCAACGCTGTTTATTTTAATTACTTTTTCTTTCTTTTTGAT
GCGTCTTGCCCCTGGCAGCCCGTTCACTTCTGAACGCGCTTATCCGCCAGAAGTCATGGCTAATATCGAAGCGAAGTATC
ATTTAAATGAACCATTATATAAACAATATTTCCTTTATTTAGAAAATCTTTCCAAAGGAGATTTTGGTCCCTCTTTTAAA
TATAAAGACCAATCAGTCAATGATTTAATCGCGTCAGCTTTCCCTGTTTCCATAAAATTGGGCATGGTGGCCTTCGCCTT
TGCAGTCGTGCTAGGAGTAACAGCAGGTACGCTCGCCGCTCTGAATCAAAATAGCCGTTGGGATTATATTTTGATGAGTT
TCTCGATGCTTGGGGTCATTATGCCAAGCTTCGTATTTGCACCTATTTTAGTGCTAATTTTCGCCATTTATCTAGGATGG
CTGCCAGCTGGCGGTTGGAACGGCGGTACCGCCATATACATGATCTTACCTGTAGCCTCCTTAACTATCGCTTATGTTGC
AGGGATTGCGCGTATCATGCGTGGTTCGATGATTGAAGTGTTACATTCCAACTTTATTCGAACCGCCAAAGCTAAAGGAC
TTTCCATGTCGAGAATCATTTTAAAACATGCTTTGCGTCCCGCACTTTTACCCGTGATAACCTATTTAGGACCTGCTTTC
GTAGGGATTATTACCGGCTCAATGGTCATCGAAAGCGTATTTGGTTTACCTGGCATGGGATTATTATTTGTAAACGGCGC
ATTGAACCGCGATTACTCTTTAGTTTTGAGCCTCACCATTTTAGTGGGGACATTAACCATTTTATTTAATGCGATTGTGG
ATATTTTATACGCCATCATCGATCCAAAAATTCGTTATTAA

Upstream 100 bases:

>100_bases
TTTATATTATTAAACATTAATTCGTTGCTCGTATTTAAGTGCGGTTAAAAATCGTCGTATTTTTTGACCGCACTTTTCGC
CCATTTTGGTTGGAGTTGTT

Downstream 100 bases:

>100_bases
GGATAAGTTATGACAGATTATCGTACTCAGCCGATTAATCAGAAAAATGCGGATTTTGTGGAACAAGTGGCTGACCGTAT
TGAAGAAATGCAACTGGAAG

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLYKQYFLYLENLSKGDFGPSFK
YKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPILVLIFAIYLGW
LPAGGWNGGTAIYMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF
VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAIIDPKIRY

Sequences:

>Translated_306_residues
MLKFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLYKQYFLYLENLSKGDFGPSFK
YKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPILVLIFAIYLGW
LPAGGWNGGTAIYMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF
VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAIIDPKIRY
>Mature_306_residues
MLKFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLYKQYFLYLENLSKGDFGPSFK
YKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAALNQNSRWDYILMSFSMLGVIMPSFVFAPILVLIFAIYLGW
LPAGGWNGGTAIYMILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF
VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAIIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=75.4901960784314, Blast_Score=484, Evalue=1e-138,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=37.5404530744337, Blast_Score=205, Evalue=4e-54,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=31.9526627218935, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.5806451612903, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=28.1767955801105, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=31.1355311355311, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787761, Length=312, Percent_Identity=30.4487179487179, Blast_Score=114, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33687; Mature: 33687

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHEECCCHHH
KQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAA
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNQNSRWDYILMSFSMLGVIMPSFVFAPILVLIFAIYLGWLPAGGWNGGTAIYMILPVAS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAII
HHHHHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHEECCCHHH
KQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAA
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNQNSRWDYILMSFSMLGVIMPSFVFAPILVLIFAIYLGWLPAGGWNGGTAIYMILPVAS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAII
HHHHHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]