Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 148825893

GI number: 148825893

Start: 889248

End: 890723

Strand: Direct

Name: rng [H]

Synonym: CGSHiEE_04290

Alternate gene names: 148825893

Gene position: 889248-890723 (Clockwise)

Preceding gene: 148825890

Following gene: 148825894

Centisome position: 49.05

GC content: 39.16

Gene sequence:

>1476_bases
ATGGATGCTGTAGAGTTATTGATGAACGTAACGCCTAACGAAACACGCATTGCGCTAGTAGAAACAGGAATGTTGCGCGA
AGTGCATATTGAACGCCAAGCCAAACGAGGAATTGTCGGGAATATTTATAAAGGTCGTGTGACTCGAGTGTTACCTGGAA
TGCAGTCGGCTTTTGTTGACATTGGTTTGGAAAAAGCGGCTTTTTTACACGCTGCTGACATTGTGTCCCACACAGAATGT
GTAGATGAAAATGAACAAAAGCAATTTAAAGTTAAGAGTATTTCAGAATTAGTACGCGAAGGGCAGGATATTGTTGTACA
AGTGGTGAAAGATCCGCTAGGTACAAAAGGCGCACGTTTAACAACAGATATCACATTGCCATCGCGTCATCTTGTTTTTA
TGCCGGAAAATAGCCATGTGGGCGTTTCACAACGCATTGAAAGCGAAGAAGAACGTGCCCGTTTAAAAGCATTGGTTGAA
CCATTTTGTGATGAACTCGGTGGTTTTATTATTCGTACTGCCACAGAAGGGGCAAGCGAAGAAGAATTACGTCAAGATGC
TGAATTTTTAAAACGCTTATGGCGTAAAGTCTTAGAGCGTAAATCTAAATATCCAACTAAATCAAAAATTTACGGCGAGC
CCGCTCTTCCACAACGTATTTTGCGTGATTTTATCGGCACAAACTTAGAAAAAATTCGTATCGATTCTAAACTTTGCTTT
GGTGAAGTGAAAGAATTTACCGATGAATTTATGCCTGAACTAAGCGATAAACTTGTTCTTTATTCTGGTAATCAACCTAT
CTTTGATGTGTATGGGGTAGAAAATGCGATCCAAACAGCGCTAGATAAACGTGTTAATCTCAAATCGGGCGGCTATTTAA
TTATCGAGCAAACAGAAGCGATGACCACCATTGATATTAATACAGGCGCATTTGTGGGGCATCGTAATCTAGAAGAAACC
ATCTTCAATACCAATATTGAAGCAACTAAAGCCATTGCGCAGCAATTACAACTACGTAATCTTGGTGGCATAATCATTAT
TGATTTTATTGATATGCAAACAGATGAACATCGCAATCGAGTATTGCAATCTTTATGTGATGCGCTTTCTAAAGATCGTA
TGAAAACTAATGTGAATGGCTTTACGCAATTAGGCCTTGTAGAAATGACTCGTAAAAGAACCCGCGAAAGCCTTGAACAC
GTGCTATGCGATGAATGTCCAACTTGTCATGGACGTGGTCGTGTGAAAACTGTTGAGACAGTTTGCTACGAAATTATGCG
TGAAATTATTCGGGTGTATCATTTATTCAGTAGTGAACAATTTGTTGTTTATGCCTCGCCAGCAGTTTCCGAATACCTTA
TTAATGAAGAATCTCACGGTTTACTGCCAGAAGTGGAAATGTTTATTGGAAAACGAGTAAAAGTAAAAACAGAACAGTTT
TATAACCAAGAACAGTTTGATGTGGTTGTAATGTAA

Upstream 100 bases:

>100_bases
TGGGTTAAAAATTTCAGAAAGGGTGCATTTTACCTTATTTCGGGCTATTATTCTATTTAGACTAAATATTTGATGAAATT
TAAGAAATTAGGAATATAAA

Downstream 100 bases:

>100_bases
ACTCTATTTCAATAAAGTGCGGTAAAAATTTTTGAGATTTTCACCGCATTTTTTATTTATAAAATTTATATCTTAATCTA
TATGATGTAGAATTAGGCAG

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MDAVELLMNVTPNETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHAADIVSHTEC
VDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKALVE
PFCDELGGFIIRTATEGASEEELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCF
GEVKEFTDEFMPELSDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLEET
IFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEH
VLCDECPTCHGRGRVKTVETVCYEIMREIIRVYHLFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQF
YNQEQFDVVVM

Sequences:

>Translated_491_residues
MDAVELLMNVTPNETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHAADIVSHTEC
VDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKALVE
PFCDELGGFIIRTATEGASEEELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCF
GEVKEFTDEFMPELSDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLEET
IFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEH
VLCDECPTCHGRGRVKTVETVCYEIMREIIRVYHLFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQF
YNQEQFDVVVM
>Mature_491_residues
MDAVELLMNVTPNETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHAADIVSHTEC
VDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKALVE
PFCDELGGFIIRTATEGASEEELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCF
GEVKEFTDEFMPELSDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLEET
IFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEH
VLCDECPTCHGRGRVKTVETVCYEIMREIIRVYHLFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQF
YNQEQFDVVVM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=487, Percent_Identity=71.6632443531827, Blast_Score=711, Evalue=0.0,
Organism=Escherichia coli, GI1787325, Length=455, Percent_Identity=36.043956043956, Blast_Score=266, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 55905; Mature: 55905

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVELLMNVTPNETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVD
CCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHCHHHHHCCCHHHHHHH
IGLEKAAFLHAADIVSHTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARL
HCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEE
TTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKALVEPFCDELGGFIIRTATEGASE
EEEEECCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCH
EELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHH
GEVKEFTDEFMPELSDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEA
HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCC
MTTIDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNR
EEEEECCCCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
VLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVET
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
VCYEIMREIIRVYHLFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQF
HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHCCCEEEEHHHH
YNQEQFDVVVM
CCCCCEEEEEC
>Mature Secondary Structure
MDAVELLMNVTPNETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVD
CCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHCHHHHHCCCHHHHHHH
IGLEKAAFLHAADIVSHTECVDENEQKQFKVKSISELVREGQDIVVQVVKDPLGTKGARL
HCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEE
TTDITLPSRHLVFMPENSHVGVSQRIESEEERARLKALVEPFCDELGGFIIRTATEGASE
EEEEECCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCH
EELRQDAEFLKRLWRKVLERKSKYPTKSKIYGEPALPQRILRDFIGTNLEKIRIDSKLCF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHH
GEVKEFTDEFMPELSDKLVLYSGNQPIFDVYGVENAIQTALDKRVNLKSGGYLIIEQTEA
HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCC
MTTIDINTGAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNR
EEEEECCCCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
VLQSLCDALSKDRMKTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCHGRGRVKTVET
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
VCYEIMREIIRVYHLFSSEQFVVYASPAVSEYLINEESHGLLPEVEMFIGKRVKVKTEQF
HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHCCCEEEEHHHH
YNQEQFDVVVM
CCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]