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The map label for this gene is exbD [H]

Identifier: 148825469

GI number: 148825469

Start: 339861

End: 340304

Strand: Direct

Name: exbD [H]

Synonym: CGSHiEE_01805

Alternate gene names: 148825469

Gene position: 339861-340304 (Clockwise)

Preceding gene: 148825468

Following gene: 148825470

Centisome position: 18.75

GC content: 35.14

Gene sequence:

>444_bases
GTGAAAAAATTTGATGAAATCAACATTATCCCTTTCATTGATATTATGTTGGTATTGCTTACTGTGGTGCTTATTACTGC
ATCTTTTATCTCTCAAGGTAAAATTCAAGTAAATGTACCAAAAGCCAGTACAGCAGTCGCATTTAAATCTGACGAGCTCG
CTAAATTATTAACAGTGACAGCGGATAAACAGCTCTATTTCAATGATAGACCTATTACGCAAGAAGCTCTTGAAGCAGAA
ATTGCTCAATGGAATAAAGATCAGAAAGTCACTTTAAAAATTGATGCCGAAGCCTCCTTCCAAGATTTTGTGACTATTAC
AGATATGCTTTCTAAAAATGAAATCAAAAATGTGGCAATTGTTTCTATGAAAGATAAGGGAAAAAGTGCGGGTAAAAATT
CTCAAGAATCTACTCCCTCCCAATCTGTACCAACTACGCCGTAA

Upstream 100 bases:

>100_bases
TATTCCATCTATGGTGTTTTATAACGGTTTAGGTCGTAAAGTGGAAGTTAATCGTTTGAAATGGAAAGTATTAAACGAAC
AAAAAGATAAGGAATAATCA

Downstream 100 bases:

>100_bases
GGAATAATTATGCAGCAAACAAAACGTTCGCTATTGGGTTTGCTTATTTCTTTGATCGTACACGGTATTGTTATAGGATT
TATCTTGTGGAATTGGAATA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDRPITQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP

Sequences:

>Translated_147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDRPITQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP
>Mature_147_residues
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVTADKQLYFNDRPITQEALEAE
IAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAIVSMKDKGKSAGKNSQESTPSQSVPTTP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16220; Mature: 16220

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHEE
ADKQLYFNDRPITQEALEAEIAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAI
CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VSMKDKGKSAGKNSQESTPSQSVPTTP
EEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKFDEINIIPFIDIMLVLLTVVLITASFISQGKIQVNVPKASTAVAFKSDELAKLLTVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHEE
ADKQLYFNDRPITQEALEAEIAQWNKDQKVTLKIDAEASFQDFVTITDMLSKNEIKNVAI
CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VSMKDKGKSAGKNSQESTPSQSVPTTP
EEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7828935; 7542800 [H]