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The map label for this gene is 148825295

Identifier: 148825295

GI number: 148825295

Start: 167204

End: 167527

Strand: Direct

Name: 148825295

Synonym: CGSHiEE_00875

Alternate gene names: NA

Gene position: 167204-167527 (Clockwise)

Preceding gene: 148825293

Following gene: 148825296

Centisome position: 9.22

GC content: 37.04

Gene sequence:

>324_bases
ATGAACGACAAACGCAAACCGTCTTTTCAATCCGCAGGCAAAACCTTTCAAGAACGCTCAGTGGGGGAAAAGTATCTAGA
AAAACCAAGCCAAAATCGACCGCACTTTAATGATAAATTTAATGGAAATAGAAACGAAAAATCTCGTTTTTCTCGTGATA
AACAAGAAGTGAAAGAAACTAAAATTACGCAACTTTCTTTATCTCGTGCGCCATCAAATAAAAATGTAGAAAAACCTAAG
GTTCAAGTGACAATAAAAACGACGGGCACAATTTATAAAACAAAAGAAAAGAAAAACGGGTGCACTTTCTCCTCGTGCGC
CTGA

Upstream 100 bases:

>100_bases
CATGCGCTTATTAATAGAAAAAAGGCTTTTTTCGTTATAATGCTCACAAATTTTAGCATTTTTTGGCTAAAAAATAGCCA
TTTTAATTCAGGGAAATCCT

Downstream 100 bases:

>100_bases
AAAAATTAAGAAAAACCGTGCGGAAGAAATGAAGGTTTACGGTGAAAATGCCTGTTTAGCTTTATTTGCAGAACGCCCTG
AAAGTATCGTTCGATTGTGG

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNDKRKPSFQSAGKTFQERSVGEKYLEKPSQNRPHFNDKFNGNRNEKSRFSRDKQEVKETKITQLSLSRAPSNKNVEKPK
VQVTIKTTGTIYKTKEKKNGCTFSSCA

Sequences:

>Translated_107_residues
MNDKRKPSFQSAGKTFQERSVGEKYLEKPSQNRPHFNDKFNGNRNEKSRFSRDKQEVKETKITQLSLSRAPSNKNVEKPK
VQVTIKTTGTIYKTKEKKNGCTFSSCA
>Mature_107_residues
MNDKRKPSFQSAGKTFQERSVGEKYLEKPSQNRPHFNDKFNGNRNEKSRFSRDKQEVKETKITQLSLSRAPSNKNVEKPK
VQVTIKTTGTIYKTKEKKNGCTFSSCA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123
- InterPro:   IPR016479 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: NA

Molecular weight: Translated: 12303; Mature: 12303

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKRKPSFQSAGKTFQERSVGEKYLEKPSQNRPHFNDKFNGNRNEKSRFSRDKQEVKET
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KITQLSLSRAPSNKNVEKPKVQVTIKTTGTIYKTKEKKNGCTFSSCA
HHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MNDKRKPSFQSAGKTFQERSVGEKYLEKPSQNRPHFNDKFNGNRNEKSRFSRDKQEVKET
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
KITQLSLSRAPSNKNVEKPKVQVTIKTTGTIYKTKEKKNGCTFSSCA
HHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]