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The map label for this gene is ydcM [C]

Identifier: 148824074

GI number: 148824074

Start: 3205695

End: 3207077

Strand: Reverse

Name: ydcM [C]

Synonym: TBFG_12899

Alternate gene names: 148824074

Gene position: 3207077-3205695 (Counterclockwise)

Preceding gene: 148824076

Following gene: 148824072

Centisome position: 72.49

GC content: 65.44

Gene sequence:

>1383_bases
GTGATGGCGCGCTTAAAGGTGCCTGAGGGGTGGTGTGTGCAGGCGTTTCGGTTCACGCTGAACCCGACCCAGACGCAAGC
TGCCAGCTTGGCGCGCCATTTTGGTGCTCGCCGTAAGGCATTCAACTGGACCGTCACGGCGCTTAAAGCCGACATCAAGG
CGTGGCGCGCGGATGGCACCGAGTCGGCGAAGCCGTCGCTGCGGGTGTTGCGCAAACGGTGGAACACGGTCAAAGACCAG
GTGTGTGTCAACGCGCAGACCGGGCAGGTGTGGTGGCCGGAATGCTCGAAAGAGGCCTATGCCGATGGCATCGCGGGCGC
GGTCGATGCGTATTGGAACTGGCAGAGCTGCCGTGCCGGGAAACGGGCTGGCAAAACAGTAGGCGTTCCCCGGTTTAAGA
AGAAGGGACGCGACGCCGATCGCGTGTGCTTCACGACCGGTGCGATGCGTGTGGAGCCCGACCGCCGCCACCTCACCTTG
CCGGTGATCGGCACCATCCGTACGTACGAGAACACCCGCCGGGTTGAGCGGCTCATCGCCAAAGGTCGGGCGCGGGTGCT
GGCGATCACCGTGCGCCGCAACGGCACCCGCCTGGATGCGAGCGTGCGGGTGCTCGTCCAACGCCCCCAACAGCGGCGTG
TGGCGCTTCCTGATTCACGGGTGGGTGTCGACGTTGGTGTGCGGCGTTTGGCCACTGTTGCAGACGCTGAGGGCACGGTG
CTTGAACAAGTGCCGAATCCTCGCCCGCTTGATGCTGCGTTGCGCGGGTTGCGCCGCGTCAGCCGCGCACGCTCACGCTG
CACGAAAGGCTCACGCCGCTACTGTGAGCGCACCACCGAACTGTCCCGGCTGCACCGTCGGGTCAACGATGTCCGTACCC
ACCACCTGCACGTGCTGACAACACGATTGGCCAAAACCCACGGCCGTATCGTTGTCGAAGGTCTGGATGCGGCGGGAATG
CTGCGGCAAAAGGGACTGCCGGGGGCGCGCGCCAGACGGCGCGCACTGTCTGATGCAGCCCTGGCAACCCCGCGCCGTCA
CCTGTCCTACAAGACAGGCTGGTACGGATCGAGTCTGGTGGTCGCCGACCGCTGGTTCCCATCGTCGAAAACCTGCCATG
CCTGCCGGCATGTGCAAGACATCGGCTGGGACGAAAAATGGCAATGCGACGGCTGTTCGATCACGCACCAACGTGACGAC
AACGCCGCGATCAACCTCGCACGCTACGAGGAACCACCTAGCGTCGTCGGCCCAGTTGGGGCCGCCGTCAAGCGTGGAGC
CGACCGTAAGACCGGGCCTGGCCCGGCGGGTGGCCGTGAAGCGCGGAAGGCAACCGGCCACCCGGCCGGCGAACAACCCC
GAGACGGGGTGCAAGTCAAGTGA

Upstream 100 bases:

>100_bases
TGACGTCGATATGTGCGCGGCTCTACGGCAAACGCGCTGCTGGCAACCGTGCTGCGCGTGCCGTGGCCGCGGCGGCACGC
GCCGGGGGACATGAGGCTAG

Downstream 100 bases:

>100_bases
CCACTAAAGATCACTCACTTGCAACGGTTTAGTATCGATTCGCTGATGATCCAGCGCGGCTGCGGTGGCGTCACCGCCAT
ATAACCCACACCGCGAACGG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVQVK

Sequences:

>Translated_460_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVQVK
>Mature_460_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVQVK

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family

Homologues:

Organism=Escherichia coli, GI288549314, Length=297, Percent_Identity=27.9461279461279, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2885_MYCTU (Q10809)

Other databases:

- EMBL:   BX842581
- EMBL:   AE000516
- PIR:   H70924
- RefSeq:   NP_217401.1
- RefSeq:   NP_337464.1
- EnsemblBacteria:   EBMYCT00000002376
- EnsemblBacteria:   EBMYCT00000071289
- GeneID:   887173
- GeneID:   925327
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2953
- KEGG:   mtu:Rv2885c
- TIGR:   MT2953
- TubercuList:   Rv2885c
- GeneTree:   EBGT00050000018327
- HOGENOM:   HBG708915
- OMA:   ACEVEIP
- ProtClustDB:   CLSK792079
- GO:   GO:0032196
- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35

EC number: NA

Molecular weight: Translated: 51284; Mature: 51284

Theoretical pI: Translated: 11.66; Mature: 11.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGT
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCC
ESAKPSLRVLRKRWNTVKDQVCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCHHHHHCCCHHHHHHHCCCHHHHHH
KRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTLPVIGTIRTYENTRRVERLIA
HHCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHH
KGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
CCCCEEEEEEEECCCCEEHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAKTHGRIVVEGLDAAGMLRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLV
HHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEECCCCCCEEE
VADRWFPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVG
EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCHHCHHH
AAVKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVQVK
HHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGT
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCC
ESAKPSLRVLRKRWNTVKDQVCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCHHHHHCCCHHHHHHHCCCHHHHHH
KRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTLPVIGTIRTYENTRRVERLIA
HHCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHH
KGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
CCCCEEEEEEEECCCCEEHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAKTHGRIVVEGLDAAGMLRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLV
HHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEECCCCCCEEE
VADRWFPSSKTCHACRHVQDIGWDEKWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVG
EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCHHCHHH
AAVKRGADRKTGPGPAGGREARKATGHPAGEQPRDGVQVK
HHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036