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The map label for this gene is ybeY [C]

Identifier: 148823570

GI number: 148823570

Start: 2661659

End: 2662207

Strand: Reverse

Name: ybeY [C]

Synonym: TBFG_12393

Alternate gene names: 148823570

Gene position: 2662207-2661659 (Counterclockwise)

Preceding gene: 148823571

Following gene: 148823569

Centisome position: 60.17

GC content: 62.3

Gene sequence:

>549_bases
GTGCGTGAGCATCTTATGAGCATCGAGGTAGCCAACGAGTCAGGCATCGACGTCTCGGAAGCGGAACTAGTCAGTGTCGC
ACGGTTTGTCATCGCCAAGATGGACGTCAATCCGTGCGCCGAATTGTCGATGCTGCTGCTGGACACCGCGGCGATGGCCG
ACCTACACATGCGCTGGATGGATCTTCCCGGGCCGACCGACGTGATGAGCTTCCCGATGGACGAGCTCGAGCCGGGTGGT
CGCCCCGACGCCCCCGAACCGGGACCGTCCATGCTGGGCGATATCGTGCTGTGCCCGGAATTCGCCGCTGAGCAGGCGGC
TGCGGCCGGCCACAGCCTGGGCCACGAATTGGCCCTGCTGACCATCCACGGTGTGCTTCACCTGCTCGGCTATGACCACG
CCGAGCCAGACGAGGAAAAAGAGATGTTCGCCCTGCAGGACCGGTTGCTTGAAGAGTGGGTAGCCGACCAGGTTGAGGCC
TACCAGCACGACCGGCAGGACGAGAAGGACCGCCGGTTGCTCGACAAGTCAAGGTATTTTGACCTTTGA

Upstream 100 bases:

>100_bases
CTCGGAGATCGTGGACGCTTATGCGCGGTACGAGGAGCCCGGGTCGGGGCTGAATCGGGCGGCTCGGCGGGCGTCCGGCG
CCCGCGGTCGCCGATGATGG

Downstream 100 bases:

>100_bases
CCGGGTACTACCAGCTGCTCGGCTCGATCGTATTGATCGGTTTGGGTGGGTTGTTCGCCGCGATTGACGCCGCCATCAGC
ACCGTGTCTCCGGCCCGGGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MREHLMSIEVANESGIDVSEAELVSVARFVIAKMDVNPCAELSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG
RPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEA
YQHDRQDEKDRRLLDKSRYFDL

Sequences:

>Translated_182_residues
MREHLMSIEVANESGIDVSEAELVSVARFVIAKMDVNPCAELSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG
RPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEA
YQHDRQDEKDRRLLDKSRYFDL
>Mature_182_residues
MREHLMSIEVANESGIDVSEAELVSVARFVIAKMDVNPCAELSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG
RPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEA
YQHDRQDEKDRRLLDKSRYFDL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=94, Percent_Identity=36.1702127659575, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 20323; Mature: 20323

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREHLMSIEVANESGIDVSEAELVSVARFVIAKMDVNPCAELSMLLLDTAAMADLHMRWM
CCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGHELALL
CCCCCHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEAYQHDRQDEKDRRLLDKSRYF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
DL
CC
>Mature Secondary Structure
MREHLMSIEVANESGIDVSEAELVSVARFVIAKMDVNPCAELSMLLLDTAAMADLHMRWM
CCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGHELALL
CCCCCHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEWVADQVEAYQHDRQDEKDRRLLDKSRYF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA