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The map label for this gene is ymdB [C]

Identifier: 148823111

GI number: 148823111

Start: 2153430

End: 2154506

Strand: Reverse

Name: ymdB [C]

Synonym: TBFG_11928

Alternate gene names: 148823111

Gene position: 2154506-2153430 (Counterclockwise)

Preceding gene: 148823112

Following gene: 148823109

Centisome position: 48.7

GC content: 70.94

Gene sequence:

>1077_bases
ATGTCCCGGGCTGCCGGGTTGCCCCGGTTGTCCTGGTTTGCCGGGCTGACCTGGTTCGCCGGGGGTTCCACCGGGGCCGG
GTGCGCCGCCCACCCCGCCCTGGCCGGGTTGACCGCCGGGGCCCGCTGCCCCGCCTATGCCGCCATCTCCGCCTCTACCG
CCCGCCCCGCCGCGACCGCCTTGCCCGCCGTCGCCGCCTCTACCGCCCGCCCCGCCGCGACCGCCGGCACCACCCCGGCC
ACCGGCGCCTCCGGCTCCGCCCGGCCCACCGACGCCGCGGGCATGGCTGACCTCGCCCGGCCCGGCGTCGTCGCCACTCA
TGCTGTTCGCACCCTCGGTACAACTGGATCACGAGCCATCGGTCTGTGTCCTTGCCAGCCGCTTGATTGTCCTCGTTCAC
CTCAAGCTACCCTGAATCTGGGCTCGATGGGCCGGAGTCTCGATGGGCCGCAGTGGCGCCGGGCGAGGGTTCGATTGTGT
GGGCGATGGTGGCGACGGTCCAACACAACAAGGGGTGCATCACCGCGGCCGCCGAGTACTTGCAGGGGGGACAATGTGTC
GATGATCGAGTTGGAGGTACATCAGGCCGACGTGACCAAGCTCGAGCTCGACGCCATCACCAATGCGGCGAACACCCGAC
TGCGGCATGCCGGTGGTGTCGCTGCGGCCATCGCCCGCGCCGGCGGCCCCGAGCTGCAGCGCGAGTCCACCGAGAAGGCG
CCGATTGGGCTTGGGGAAGCGGTCGAGACCACGGCCGGTGACATGCCGGCGCGCTACGTGATCCACGCGGCGACGATGGA
GCTAGGAGGTCCGACCTCGGGCGAGATCATCACCGCAGCCACCGCTGCTACCCTGCGGAAAGCCGACGAGCTCGGTTGCC
GCTCGCTGGCGCTGGTGGCTTTCGGCACGGGCGTGGGCGGCTTTCCGCTCGACGACGCTGCGCGGCTGATGGTCGGCGCC
GTCCGTCGGCACCGGCCGGGGTCGCTGCAAAGGGTGGTATTTGCGGTCCATGGGGATGCGGCCGAGCGGGCGTTTAGCGC
TGCTATTCAGGCCGGAGAAGATACCGCTCGACGGTAG

Upstream 100 bases:

>100_bases
GGCACCGGTTCGCCGAGCGTGGTGAGCAGGAACTCAAGGGCGTACCGGGCAGATGGCGGCTATGCGTGCTCATGCGCGAC
GACGCCACCCGCACGCGCTA

Downstream 100 bases:

>100_bases
CGACCTTCTGGGTCATCGCGTCGGTGACCCCGGGACGCCAGTCCACCTTGATCACCGCGCTGACTCGCGGTGCCCGAGCG
GCCACGGCCTCCACCGCGCG

Product: lipoprotein lppD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSRAAGLPRLSWFAGLTWFAGGSTGAGCAAHPALAGLTAGARCPAYAAISASTARPAATALPAVAASTARPAATAGTTPA
TGASGSARPTDAAGMADLARPGVVATHAVRTLGTTGSRAIGLCPCQPLDCPRSPQATLNLGSMGRSLDGPQWRRARVRLC
GRWWRRSNTTRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTEKA
PIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKADELGCRSLALVAFGTGVGGFPLDDAARLMVGA
VRRHRPGSLQRVVFAVHGDAAERAFSAAIQAGEDTARR

Sequences:

>Translated_358_residues
MSRAAGLPRLSWFAGLTWFAGGSTGAGCAAHPALAGLTAGARCPAYAAISASTARPAATALPAVAASTARPAATAGTTPA
TGASGSARPTDAAGMADLARPGVVATHAVRTLGTTGSRAIGLCPCQPLDCPRSPQATLNLGSMGRSLDGPQWRRARVRLC
GRWWRRSNTTRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTEKA
PIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKADELGCRSLALVAFGTGVGGFPLDDAARLMVGA
VRRHRPGSLQRVVFAVHGDAAERAFSAAIQAGEDTARR
>Mature_357_residues
SRAAGLPRLSWFAGLTWFAGGSTGAGCAAHPALAGLTAGARCPAYAAISASTARPAATALPAVAASTARPAATAGTTPAT
GASGSARPTDAAGMADLARPGVVATHAVRTLGTTGSRAIGLCPCQPLDCPRSPQATLNLGSMGRSLDGPQWRRARVRLCG
RWWRRSNTTRGASPRPPSTCRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTEKAP
IGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKADELGCRSLALVAFGTGVGGFPLDDAARLMVGAV
RRHRPGSLQRVVFAVHGDAAERAFSAAIQAGEDTARR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI154813199, Length=176, Percent_Identity=31.25, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI13569840, Length=179, Percent_Identity=30.7262569832402, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI117968621, Length=150, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI226371710, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI226371706, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI226371716, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI226371714, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI226371712, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI226371718, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI1787283, Length=175, Percent_Identity=32.5714285714286, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538214, Length=163, Percent_Identity=31.9018404907975, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 36422; Mature: 36290

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAAGLPRLSWFAGLTWFAGGSTGAGCAAHPALAGLTAGARCPAYAAISASTARPAATA
CCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
LPAVAASTARPAATAGTTPATGASGSARPTDAAGMADLARPGVVATHAVRTLGTTGSRAI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEE
GLCPCQPLDCPRSPQATLNLGSMGRSLDGPQWRRARVRLCGRWWRRSNTTRGASPRPPST
EECCCCCCCCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
CRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTEKA
CCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCC
PIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKADELGCRSLALVA
CCCCCCHHHHCCCCCCHHEEEEEEEHCCCCCCCCCEEEHHHHHHHHHHHHHCCCEEEEEE
FGTGVGGFPLDDAARLMVGAVRRHRPGSLQRVVFAVHGDAAERAFSAAIQAGEDTARR
EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SRAAGLPRLSWFAGLTWFAGGSTGAGCAAHPALAGLTAGARCPAYAAISASTARPAATA
CCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH
LPAVAASTARPAATAGTTPATGASGSARPTDAAGMADLARPGVVATHAVRTLGTTGSRAI
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEE
GLCPCQPLDCPRSPQATLNLGSMGRSLDGPQWRRARVRLCGRWWRRSNTTRGASPRPPST
EECCCCCCCCCCCCCCEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
CRGDNVSMIELEVHQADVTKLELDAITNAANTRLRHAGGVAAAIARAGGPELQRESTEKA
CCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCC
PIGLGEAVETTAGDMPARYVIHAATMELGGPTSGEIITAATAATLRKADELGCRSLALVA
CCCCCCHHHHCCCCCCHHEEEEEEEHCCCCCCCCCEEEHHHHHHHHHHHHHCCCEEEEEE
FGTGVGGFPLDDAARLMVGAVRRHRPGSLQRVVFAVHGDAAERAFSAAIQAGEDTARR
EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]