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The map label for this gene is yggR [C]

Identifier: 148663521

GI number: 148663521

Start: 4105382

End: 4106440

Strand: Reverse

Name: yggR [C]

Synonym: MRA_3693

Alternate gene names: 148663521

Gene position: 4106440-4105382 (Counterclockwise)

Preceding gene: 148663522

Following gene: 148663520

Centisome position: 92.91

GC content: 68.65

Gene sequence:

>1059_bases
ATGCTCGGCGACACCGAAGTGCTGGCGAATCTTCGTGTGCTGCAGACAGAACTGACCGGCGCTGGCATCCTCGAACCGCT
GCTATCCGCAGACGGCACCACCGACGTTCTGGTCACCGCGCCCGACTCGGTGTGGGTGGACGACGGAAACGGATTGCGAC
GCAGCCAGATTCGGTTTGCTGACGAGTCAGCGGTGCGAAGGTTGGCACAACGGCTGGCTTTGGCGGCCGGCCGTCGGCTC
GACGACGCGCAACCCTGGGTGGACGGTCAACTAACCGGGATCGGCGTCGGAGGGTTCGCGGTGCGGCTGCATGCGGTGTT
GCCGCCCGTGGCGACCCAGGGCACTTGCTTGTCGTTGCGGGTGTTGCGTCCCGCGACTCAGGATCTGGCCGCGTTGGCTG
CGGCGGGCGCGATCGACCCCGCGGCCGCCGCGCTGGTCGCCGACATCGTCACCGCCCGGCTGGCATTCCTCGTGTGCGGC
GGAACCGGTGCCGGGAAGACAACGTTGCTGGCAGCGATGTTGGGCGCCGTGTCGCCCGATGAGCGGATCGTGTGCGTCGA
GGATGCCGCCGAGCTGGCCCCTCGGCATCCACATCTGGTCAAGCTGGTTGCGCGGCGTGCGAACGTCGAAGGAATCGGTG
AGGTAACCGTGCGTCAACTCGTCCGACAGGCGCTGCGGATGCGGCCCGACCGCATCGTGGTCGGTGAGGTTAGGGGAGCC
GAGGTGGTGGATCTGTTGGCGGCGCTCAATACCGGTCACGAGGGCGGCGCGGGCACCGTACACGCCAACAACCCGGGTGA
GGTCCCTGCACGCATGGAAGCGTTGGGGGCGCTCGGCGGCCTTGACCGCGCTGCTCTGCACAGCCAGCTCGCCGCGGCAG
TCCAAGTCCTGCTGCACGTCGCGCGCGATCGGGCAGGCCGTCGCCGGCTCGCCGAGATCGCCGTGCTGCGCCAAGCTGAA
GGGCGGGTCCAGGCGGTGACGGTGTGGCACGCGGACCGTGGGATGAGTGACGACGCGGCCGCCCTGCACGATTTGCTGAG
AAGCCGGGCATCGGCATGA

Upstream 100 bases:

>100_bases
CGGCTCCCTGATCGAACGCGTCCGCGAACGGCTGGCATCCGAATCCGGCCCGCTGCGGCCCAGTGTGGTGGCCGCCGCGA
TCCGGGCCGAGTCCGGGGGG

Downstream 100 bases:

>100_bases
GCGGTATAGCGTCCGCTGCCCTGATTTTGTCGCTTGCGCTCGTGGTGTTGCCCGGGTCGCCGCGGTGCCGCCTTACTCCA
GACGACACCGGCCGGCGGGT

Product: putative secretory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MLGDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFADESAVRRLAQRLALAAGRRL
DDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLRVLRPATQDLAALAAAGAIDPAAAALVADIVTARLAFLVCG
GTGAGKTTLLAAMLGAVSPDERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGA
EVVDLLAALNTGHEGGAGTVHANNPGEVPARMEALGALGGLDRAALHSQLAAAVQVLLHVARDRAGRRRLAEIAVLRQAE
GRVQAVTVWHADRGMSDDAAALHDLLRSRASA

Sequences:

>Translated_352_residues
MLGDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFADESAVRRLAQRLALAAGRRL
DDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLRVLRPATQDLAALAAAGAIDPAAAALVADIVTARLAFLVCG
GTGAGKTTLLAAMLGAVSPDERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGA
EVVDLLAALNTGHEGGAGTVHANNPGEVPARMEALGALGGLDRAALHSQLAAAVQVLLHVARDRAGRRRLAEIAVLRQAE
GRVQAVTVWHADRGMSDDAAALHDLLRSRASA
>Mature_352_residues
MLGDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFADESAVRRLAQRLALAAGRRL
DDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLRVLRPATQDLAALAAAGAIDPAAAALVADIVTARLAFLVCG
GTGAGKTTLLAAMLGAVSPDERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGA
EVVDLLAALNTGHEGGAGTVHANNPGEVPARMEALGALGGLDRAALHSQLAAAVQVLLHVARDRAGRRRLAEIAVLRQAE
GRVQAVTVWHADRGMSDDAAALHDLLRSRASA

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3659_MYCTU (Q7D547)

Other databases:

- EMBL:   AE000516
- EMBL:   BX842583
- PIR:   D70788
- RefSeq:   NP_338309.1
- RefSeq:   YP_178003.1
- ProteinModelPortal:   Q7D547
- SMR:   Q7D547
- EnsemblBacteria:   EBMYCT00000002148
- EnsemblBacteria:   EBMYCT00000068969
- GeneID:   885627
- GeneID:   922740
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT3759
- KEGG:   mtu:Rv3659c
- TIGR:   MT3759
- TubercuList:   Rv3659c
- GeneTree:   EBGT00050000017363
- HOGENOM:   HBG742142
- OMA:   ARCANVE
- ProtClustDB:   CLSK800012
- GO:   GO:0005737
- GO:   GO:0000746
- GO:   GO:0006810
- InterPro:   IPR022399
- InterPro:   IPR001482
- TIGRFAMs:   TIGR03819

Pfam domain/function: PF00437 GSPII_E

EC number: NA

Molecular weight: Translated: 36692; Mature: 36692

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHHHCC
DESAVRRLAQRLALAAGRRLDDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLR
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEE
VLRPATQDLAALAAAGAIDPAAAALVADIVTARLAFLVCGGTGAGKTTLLAAMLGAVSPD
EECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCC
ERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGA
CEEEEECCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
EVVDLLAALNTGHEGGAGTVHANNPGEVPARMEALGALGGLDRAALHSQLAAAVQVLLHV
HHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ARDRAGRRRLAEIAVLRQAEGRVQAVTVWHADRGMSDDAAALHDLLRSRASA
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRRSQIRFA
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHHHCC
DESAVRRLAQRLALAAGRRLDDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSLR
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCEEEEE
VLRPATQDLAALAAAGAIDPAAAALVADIVTARLAFLVCGGTGAGKTTLLAAMLGAVSPD
EECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCC
ERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGA
CEEEEECCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
EVVDLLAALNTGHEGGAGTVHANNPGEVPARMEALGALGGLDRAALHSQLAAAVQVLLHV
HHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ARDRAGRRRLAEIAVLRQAEGRVQAVTVWHADRGMSDDAAALHDLLRSRASA
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230