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The map label for this gene is cydA [H]

Identifier: 148661418

GI number: 148661418

Start: 1825948

End: 1827405

Strand: Reverse

Name: cydA [H]

Synonym: MRA_1633

Alternate gene names: 148661418

Gene position: 1827405-1825948 (Counterclockwise)

Preceding gene: 148661419

Following gene: 148661417

Centisome position: 41.34

GC content: 61.39

Gene sequence:

>1458_bases
ATGAATGTCGTCGACATTTCGCGGTGGCAGTTCGGTATCACCACCGTCTATCACTTCATTTTCGTACCGCTGACCATCGG
CCTGGCCCCGCTGATCGCGGTCATGCAAACGCTGTGGGTCGTCACCGATAACCCCGCCTGGTATCGCCTCACCAAATTCT
TCGGCAAATTGTTCCTGATCAACTTTGCCATCGGCGTGGCGACCGGAATCGTGCAGGAATTTCAGTTCGGCATGAACTGG
AGCGAGTACTCCCGATTCGTCGGCGATGTCTTCGGCGCCCCGCTGGCCATGGAGGGCCTGGCGGCCTTCTTCTTCGAATC
CACCTTCATCGGGTTGTGGATCTTCGGCTGGAACAGGCTGCCCCGGCTGGTGCATCTGGCCTGCATCTGGATCGTCGCAA
TCGCGGTCAACGTGTCCGCGTTCTTCATCATCGCGGCAAACTCCTTCATGCAGCATCCGGTCGGCGCGCACTACAACCCG
ACCACCGGGCGTGCCGAGTTGAGCAGCATCGTCGTGCTGCTGACCAACAACACCGCACAGGCGGCGTTTACCCACACTGT
CAGCGGTGCGCTGCTGACCGCCGGGACCTTCGTCGCCGCGGTGAGCGCCTGGTGGCTGGTCCGTTCGAGCACCACGCACG
CCGACTCAGATACCCAAGCCATGTATCGTCCCGCGACCATCCTGGGGTGTTGGGTTGCGTTGGCCGCCACGGCCGGGTTG
TTGTTCACCGGCGACCACCAAGGCAAGCTGATGTTCCAGCAGCAGCCGATGAAGATGGCGTCGGCCGAATCGTTGTGCGA
TACCCAGACAGATCCAAACTTCTCTGTCCTGACGGTCGGCCGGCAAAACAACTGCGACAGCCTCACCCGTGTCATCGAAG
TGCCCTATGTGTTGCCGTTCCTCGCCGAGGGCCGGATCAGCGGTGTGACGTTGCAGGGTATCCGCGATCTGCAGCAGGAA
TACCAGCAGCGCTTCGGACCAAACGACTACCGGCCCAACCTCTTCGTCACCTACTGGTCATTTCGCATGATGATCGGGTT
GATGGCGATCCCGGTGCTGTTCGCACTGATTGCGCTCTGGCTCACCCGTGGCGGCCAGATCCCCAATCAACGCTGGTTCT
CCTGGCTGGCGCTGCTAACCATGCCCGCCCCGTTCCTGGCCAACAGCGCCGGATGGGTGTTCACCGAGATGGGGCGCCAG
CCCTGGGTCGTCGTCCCTAACCCGACCGGTGATCAGCTGGTTCGACTCACCGTCAAAGCAGGCGTCTCGGATCACTCCGC
CACCGTGGTCGCCACGTCTTTGCTGATGTTCACCTTGGTCTACGCGGTACTTGCGGTCATCTGGTGCTGGCTGCTCAAGC
GTTACATCGTCGAAGGCCCCCTGGAACACGACGCGGAACCGGCTGCGCACGGGGCACCCCGCGACGACGAGGTAGCACCA
TTGTCGTTTGCTTACTGA

Upstream 100 bases:

>100_bases
GCGGTGCACCCACGATTGCCAGTAGCGCGGGCCCACTCGTGCCTACTACACTTCGTCGTAGCCAAATCAGTCGGCCCCGT
AGTATCTCCGGAGATGACAG

Downstream 100 bases:

>100_bases
GGCCAACTGACCCCGGAAAGGAGCAGCCGGTGGTACTCCAAGAATTGTGGTTCGGTGTCATCGCAGCGCTGTTCCTCGGT
TTCTTCATCCTAGAAGGGTT

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNP
TTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL
LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQE
YQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQ
PWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP
LSFAY

Sequences:

>Translated_485_residues
MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNP
TTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL
LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQE
YQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQ
PWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP
LSFAY
>Mature_485_residues
MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRLPRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNP
TTGRAELSSIVVLLTNNTAQAAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL
LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPFLAEGRISGVTLQGIRDLQQE
YQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALWLTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQ
PWVVVPNPTGDQLVRLTVKAGVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP
LSFAY

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=523, Percent_Identity=35.3728489483748, Blast_Score=292, Evalue=4e-80,
Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=34.6534653465347, Blast_Score=280, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53827; Mature: 53827

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECHHHH
PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ
HHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCCCHHHCEEEEEEECCCCH
AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCE
LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF
EEECCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW
HHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA
HHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEHHCCCCCEEEECCCCCCCEEEEEEEC
GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
LSFAY
CCCCC
>Mature Secondary Structure
MNVVDISRWQFGITTVYHFIFVPLTIGLAPLIAVMQTLWVVTDNPAWYRLTKFFGKLFLI
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDVFGAPLAMEGLAAFFFESTFIGLWIFGWNRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECHHHH
PRLVHLACIWIVAIAVNVSAFFIIAANSFMQHPVGAHYNPTTGRAELSSIVVLLTNNTAQ
HHHHHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCCCHHHCEEEEEEECCCCH
AAFTHTVSGALLTAGTFVAAVSAWWLVRSSTTHADSDTQAMYRPATILGCWVALAATAGL
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCE
LFTGDHQGKLMFQQQPMKMASAESLCDTQTDPNFSVLTVGRQNNCDSLTRVIEVPYVLPF
EEECCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LAEGRISGVTLQGIRDLQQEYQQRFGPNDYRPNLFVTYWSFRMMIGLMAIPVLFALIALW
HHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
LTRGGQIPNQRWFSWLALLTMPAPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRLTVKA
HHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEHHCCCCCEEEECCCCCCCEEEEEEEC
GVSDHSATVVATSLLMFTLVYAVLAVIWCWLLKRYIVEGPLEHDAEPAAHGAPRDDEVAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
LSFAY
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]