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The map label for this gene is cydB [H]

Identifier: 148661417

GI number: 148661417

Start: 1824878

End: 1825918

Strand: Reverse

Name: cydB [H]

Synonym: MRA_1632

Alternate gene names: 148661417

Gene position: 1825918-1824878 (Counterclockwise)

Preceding gene: 148661418

Following gene: 148661416

Centisome position: 41.31

GC content: 63.78

Gene sequence:

>1041_bases
GTGGTACTCCAAGAATTGTGGTTCGGTGTCATCGCAGCGCTGTTCCTCGGTTTCTTCATCCTAGAAGGGTTCGACTTCGG
CGTGGGCATGCTGATGGCGCCGTTCGCTCATGTCGGTATGGGCGATCCGGAGACCCACCGGCGCACGGCACTCAACACCA
TCGGACCGGTCTGGGACGGCAACGAAGTCTGGCTGATCACCGCCGGCGCGGCCATATTCGCCGCGTTTCCCGGCTGGTAC
GCGACCGTGTTCTCCGCGCTGTATCTGCCGCTGCTGGCGATCCTGTTCGGTATGATCCTGCGCGCCGTCGCCATCGAATG
GCGCGGCAAGATCGACGACCCGAAATGGCGGACCGGGGCAGACTTCGGGATCGCGGCGGGATCCTGGCTGCCTGCCCTGT
TGTGGGGTGTGGCGTTCGCCATTCTGGTCCGCGGACTCCCGGTAGACGCGAACGGTCATGTTGCCCTGTCGATTCCCGAC
GTGCTCAACGCCTACACCCTGCTGGGCGGTCTGGCGACCGCCGGACTGTTCTCGCTCTACGGCGCGGTGTTCATCGCTTT
GAAAACCTCCGGGCCGATCCGCGACGATGCCTACCGATTCGCCGTATGGCTTTCGCTTCCTGTGGCGGGACTGGTTGCGG
GCTTTGGACTTTGGACGCAACTGGCATACGGCAAAGACTGGACGTGGCTGGTGCTGGCAGTTGCGGGGTGCGCGCAGGCG
GCGGCGACGGTCTTAGTGTGGCGGCGGGTGTCCGACGGCTGGGCGTTCATGTGCACGTTGATAGTCGTGGCGGCTGTGGT
GGTGCTGCTGTTCGGCGCGCTGTACCCGAACCTGGTGCCCTCAACCCTGAACCCGCAGTGGAGCCTAACGATCCATAACG
CGTCGTCGACCCCGTACACCCTCAAGATCATGACGTGGGTGACCGCGTTCTTCGCTCCACTGACGGTGGCGTACCAGACA
TGGACGTATTGGGTTTTCCGGCAACGGATCTCAGCTGAACGGATACCTCCACCCACCGGTCTGGCGAGGCGCGCGCCCTG
A

Upstream 100 bases:

>100_bases
ACGACGCGGAACCGGCTGCGCACGGGGCACCCCGCGACGACGAGGTAGCACCATTGTCGTTTGCTTACTGAGGCCAACTG
ACCCCGGAAAGGAGCAGCCG

Downstream 100 bases:

>100_bases
GCACCAAGGCCCGGGGAACCCGGGCGCCCCTGGATCCGCGGCTGTGGCAGGCATCGGCGGCGCTGCGCCGCTATCTACTC
AGCACGGTGGCCTGCGGGGT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWY
ATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPD
VLNAYTLLGGLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA
AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQT
WTYWVFRQRISAERIPPPTGLARRAP

Sequences:

>Translated_346_residues
MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWY
ATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPD
VLNAYTLLGGLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA
AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQT
WTYWVFRQRISAERIPPPTGLARRAP
>Mature_346_residues
MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWY
ATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPD
VLNAYTLLGGLATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA
AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQT
WTYWVFRQRISAERIPPPTGLARRAP

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=377, Percent_Identity=31.5649867374005, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=29.810298102981, Blast_Score=149, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37628; Mature: 37628

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA
CEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA
HHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEE
LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAHVGMGDPETHRRTALNTIGPVWDG
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
NEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGA
CEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFGIAAGSWLPALLWGVAFAILVRGLPVDANGHVALSIPDVLNAYTLLGGLATAGLFSLY
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
GAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQA
HHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AATVLVWRRVSDGWAFMCTLIVVAAVVVLLFGALYPNLVPSTLNPQWSLTIHNASSTPYT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEE
LKIMTWVTAFFAPLTVAYQTWTYWVFRQRISAERIPPPTGLARRAP
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]