| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is yoaV [H]
Identifier: 148654138
GI number: 148654138
Start: 2916510
End: 2917448
Strand: Direct
Name: yoaV [H]
Synonym: PsycPRwf_2341
Alternate gene names: 148654138
Gene position: 2916510-2917448 (Clockwise)
Preceding gene: 148654137
Following gene: 148654139
Centisome position: 97.9
GC content: 45.58
Gene sequence:
>939_bases ATGGCCATAGGATTTTTTGTGAGCAAACGTGACCTCATAACCTTTATTACCCTGGCCTTCATGTGGTCGTTGTCTTTTAT CTTTTACCGCATTGGGGTGCCTGAATTTGGCTCAGTTGCCTTTGCCAGTATTCGCTTGGAGCTGGCGGGGATAACCATGC TTTTATTTGTGCTACTAAACCCAAAAAACCGTCAAGGCATTTTGGCTAACTGGAAGCTACTGACCATCATCGGCTTATGC TCTACTGCCATTCCATTCGTGCTGTTCGGCTATGCCGCAAAATCGGTTAATGCCGGTGTACTGGCGGTATTAAACGCCTC TGTCCCGATGATGAGTGGGGTAATGGCCAGCCTGTTCTTCAATGATAAACTGTCAAGAAAACAAATACTGGGACTTGTCA TTGGGGTCATTGGCGTGTTTATTTTGATGAGTGAAAATTTCTTGGCGATGATGCACAGCAGTGGCGGCGATCATAGCAGC TTACAATCCCAATTGTGGCCCATGGGCTTTGCGCTGTTTGCCTGTATTGGCTATGCCACCGGCGCCAACCTGACCCGCAA CTATCTAGAGCACATCTCTCCCATCGCCATTACGGCCGGCACCTTGATTACGGCCAGTATTGTGATGCTACCGGTCGCTA TTTATAATTTCCCCTATCATCACTCTATTAGCGCCAAAGCTTGGGGTTCGGTGATTTGTATTGGTATTTTATCCACTGCG ATTGCACTGATATTTATGAATCAGTTGATCAAAAGTATTGGTCCAGTACGCGCCACCAGCATCACCTTGGTCATCCCCAT TTTTGCCATTATTTTTGGCTATATATTACTCGGTGAATCACTTGATATCTTTGCCATTGTGGGCTCGGTGGTAATTTTAT TCGGCACTTATCTGTCATTAAACCTATCTGTTAAAAAACTGGCCGAAACTCAAGTCTAA
Upstream 100 bases:
>100_bases AGCCTGAATTTGGCTATATTTTGTTAATCCCATATCCATGACCCACAAGCCGGCCTATAATAGCAAGTTTTCTGCTGTTT TATACAGCTGTCTAATTTAG
Downstream 100 bases:
>100_bases ACACCTAAAAAAAGCGCCTGATTGCTCGCTCAAGGCGCTTTTTTTATGAGTATACTGTCAGGAGGTTATAGCACAGCTTT TTGTCATGGCCATCTTTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MAIGFFVSKRDLITFITLAFMWSLSFIFYRIGVPEFGSVAFASIRLELAGITMLLFVLLNPKNRQGILANWKLLTIIGLC STAIPFVLFGYAAKSVNAGVLAVLNASVPMMSGVMASLFFNDKLSRKQILGLVIGVIGVFILMSENFLAMMHSSGGDHSS LQSQLWPMGFALFACIGYATGANLTRNYLEHISPIAITAGTLITASIVMLPVAIYNFPYHHSISAKAWGSVICIGILSTA IALIFMNQLIKSIGPVRATSITLVIPIFAIIFGYILLGESLDIFAIVGSVVILFGTYLSLNLSVKKLAETQV
Sequences:
>Translated_312_residues MAIGFFVSKRDLITFITLAFMWSLSFIFYRIGVPEFGSVAFASIRLELAGITMLLFVLLNPKNRQGILANWKLLTIIGLC STAIPFVLFGYAAKSVNAGVLAVLNASVPMMSGVMASLFFNDKLSRKQILGLVIGVIGVFILMSENFLAMMHSSGGDHSS LQSQLWPMGFALFACIGYATGANLTRNYLEHISPIAITAGTLITASIVMLPVAIYNFPYHHSISAKAWGSVICIGILSTA IALIFMNQLIKSIGPVRATSITLVIPIFAIIFGYILLGESLDIFAIVGSVVILFGTYLSLNLSVKKLAETQV >Mature_311_residues AIGFFVSKRDLITFITLAFMWSLSFIFYRIGVPEFGSVAFASIRLELAGITMLLFVLLNPKNRQGILANWKLLTIIGLCS TAIPFVLFGYAAKSVNAGVLAVLNASVPMMSGVMASLFFNDKLSRKQILGLVIGVIGVFILMSENFLAMMHSSGGDHSSL QSQLWPMGFALFACIGYATGANLTRNYLEHISPIAITAGTLITASIVMLPVAIYNFPYHHSISAKAWGSVICIGILSTAI ALIFMNQLIKSIGPVRATSITLVIPIFAIIFGYILLGESLDIFAIVGSVVILFGTYLSLNLSVKKLAETQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
Organism=Escherichia coli, GI87082351, Length=296, Percent_Identity=24.6621621621622, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33676; Mature: 33545
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIGFFVSKRDLITFITLAFMWSLSFIFYRIGVPEFGSVAFASIRLELAGITMLLFVLLN CEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC PKNRQGILANWKLLTIIGLCSTAIPFVLFGYAAKSVNAGVLAVLNASVPMMSGVMASLFF CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH NDKLSRKQILGLVIGVIGVFILMSENFLAMMHSSGGDHSSLQSQLWPMGFALFACIGYAT CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GANLTRNYLEHISPIAITAGTLITASIVMLPVAIYNFPYHHSISAKAWGSVICIGILSTA CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH IALIFMNQLIKSIGPVRATSITLVIPIFAIIFGYILLGESLDIFAIVGSVVILFGTYLSL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC NLSVKKLAETQV CHHHHHHHHCCC >Mature Secondary Structure AIGFFVSKRDLITFITLAFMWSLSFIFYRIGVPEFGSVAFASIRLELAGITMLLFVLLN EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC PKNRQGILANWKLLTIIGLCSTAIPFVLFGYAAKSVNAGVLAVLNASVPMMSGVMASLFF CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH NDKLSRKQILGLVIGVIGVFILMSENFLAMMHSSGGDHSSLQSQLWPMGFALFACIGYAT CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GANLTRNYLEHISPIAITAGTLITASIVMLPVAIYNFPYHHSISAKAWGSVICIGILSTA CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH IALIFMNQLIKSIGPVRATSITLVIPIFAIIFGYILLGESLDIFAIVGSVVILFGTYLSL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC NLSVKKLAETQV CHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]