| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is btuB [C]
Identifier: 148654137
GI number: 148654137
Start: 2913699
End: 2916209
Strand: Direct
Name: btuB [C]
Synonym: PsycPRwf_2340
Alternate gene names: 148654137
Gene position: 2913699-2916209 (Clockwise)
Preceding gene: 148654135
Following gene: 148654138
Centisome position: 97.81
GC content: 47.31
Gene sequence:
>2511_bases ATGCTCACAAACTATCAAAACCACCAACCCCCAAAACGCCCAACCAATTGCCCTTTATCGCCACTGATGATGAGTATCCG TCTATATACCCAAGCGATCTGTATCCAAAACAGGACGTTGCCCGCTGCATCTGCCAAGCTGCCGTATTTGCTCCAAGCAG CCACATTGGTAGCACTGGGCGCCTATAGCACAGCGGCATTAGCAGAAGATAAGCCTTCGGTTGAGCTGGCGCCCGTTGTG GTTACCGCCAGTGCGTTTGAGCCACAAGCGGGGGATATGGCGACCGCAACCAGCGTCATCACCCAGTCGCAGATTATGCA GCAAGGCAAATCCACCTTGGGCGATGCACTAGCAAATGAGCCCGGTGTCAACTCAGATACCTTTGGTCAAGGTGCCACAC GCCCTATCATCCGAGGTCAAACTGCACCTAGAGTACAAGTGGCTCAAAATGGCATACTGGTACAAGATGCGTCACAAATA TCACCCGATCACCAAGTCTCTGTGCCTGTGCTTGGCGCCAAACAGATTGAGGTAATCAAAGGCAGCTCTGCCCTAATGTA TGGTGGCGGTGCTATTGGCGGTGTGGTCAATGTGGTCGATGACACCATCCCCTCCGAGCCGATGAATGACACAGTCAGTG GCCAATTTGGCTTGATTGGTCAGCAAGCCACAGACGGCTATCTAGGCTATGCCCAGTTAAATGGTCAGCTAAATGACAAT TGGCAGTGGACGGGGCGTTTTCAAAAGACCGATTTAGATGATGTGAAAGTACCCAAGTCACGTTATGACAAAGTCAAAAA CAGCTGGTATAAGCAAGACAATGCCAGTGTTGGCTTTGCCTATGTGGATGAGCTTGACTATGTTGGCTTCTCTTATCAGC GTCAAGACTCAGACTATGGTCTGCCGTTTCATGTGCATAACCACTGTCAGCCAGATGAGCATCGTATAAATAGACTGACG TGCGGCTTAGATGAACACGAGCATGGGGCGCATGAGCATCACGATCATGAAGAGCACGATCATGAAGAGCACGAACACGA AGAACATGGACACGAAGCGCATGAACATGGGCATGAAGAACACGGACACCAAGAACATGAACACGAACATGACGAACACG AACATGACGAACACGACCATGACGAGCATGAGCATCACCATGAACATGGCGAGCTGCCTTATGTTAAATTAAAATCCGAT GTGTATCAGATTCAAACCGAGCATTTGGTGCCCTTAACCGGTATTGATAAGCTGGCAACAAAGTTTAGTTATACCGATTA CCAGCATGATGAAATTGATGAAGGGGTTGTCGGTACCACATTCAAAAACAAGGCCTTTGGGGCGACCGTTCAGGCCACTC ATGCCACCCATCAAGTCGGTAATTTAGGTTATATGAAAGGAATCATTGGTGTCGATTATGCCAATAGCAAATTCTCCGCA CAGGGGCTAGAAGCGTATTTGCCAAAGACCCGACGCAATCAACTAGGCACTTATATTATTGAGCGTTTAACACCGACTTA TTCTGGCGCCCAAATTAATGACGCCGGCAGATTAGGCGCCCAATCCTCTAAGACACAGCAAGATAATCTGGGGCATAATC ACGGCAGCAGCACTCTGCCTACCGACAGTACCGCTACCAAGCTTGCAAAGCAGGGCAAAGACTTATGGTATGTACAGTTT GGCGGCCGTCAAGATATTCAAAAAATCGAAGATATGGATAACAATATCTCCAAATCTGATAGCGCACACTCTTTGAGTTT AGAAGCTGGGCGTTACCTGACACCGACGACCCAAATATCCGCTCGCGTTAGCCACTCTGAACGATTGCCTGCCTCACAAG AGCTGTATGCCAATGGCGCTCACTTGGCTACCAATACTTGGGAGCGTGGTAATCTACAGCTGGATAAAGAGTCCACCGAT GGTATCGAGCTTAGCCTGCGCTATGACAATAATAAGAATTTTGACCTGAGTACCTCTGTGTTTTATAACGACACAGACGA CTATATCTATGCAAAAACTCAAGACTTAGTGACCGAAGGGGAGTCGAAAGGCTTTAGATTGGTTGATTATCATCAATCAG ATGCCAAACACTATGGCGGTGAGATTAAAGCACGCTATTATCTAAATGATTATATTAGTATTGGCGGCTTTTCAGATATT GCCATTATCGAGCTAAAAGACAAACAACTCGACAGTAAGTATGCACCAAGACTGGCTGCGCCTAGAGTTGGTGGCGACAT TACTGCGCAGTTCAATCAATTTGATGTGGTGTTGTCAGGCTATCACCGTTATAAACAAGATAAGGTGGCAGACTTTGAGC ACACCACACCCAGCTATAATATGCTAGATGCCAAAGTGACTTATCACAGTGCCGGTCCGCAAGATTACACTGCATTCTTA CAAGTCTCTAACCTATTAAATGACTTGGCCTACAATCATAGCTCCTACCTTGTTGAGCATATGCCGCTGGCAGAACGCTC TTTTAATGCTGGCATCACTTACCGCTTCTAA
Upstream 100 bases:
>100_bases TTACCTTTTTAAACGTTATGTTATAGTATAACATAACGTTTTTACCGAAATGTACTCTAACCTGCCTAGCGGCATTCATT TTTATTGTTTAGGTAAGCCC
Downstream 100 bases:
>100_bases GTTCACCCTTGGCACAAAAAAAGTGCCTCAGTTGTGAATTAACTGAGGCACTTTTTTACGGGTTACTTATTTGTAGACAC TGTTATCATGGAGTGTCATC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MLTNYQNHQPPKRPTNCPLSPLMMSIRLYTQAICIQNRTLPAASAKLPYLLQAATLVALGAYSTAALAEDKPSVELAPVV VTASAFEPQAGDMATATSVITQSQIMQQGKSTLGDALANEPGVNSDTFGQGATRPIIRGQTAPRVQVAQNGILVQDASQI SPDHQVSVPVLGAKQIEVIKGSSALMYGGGAIGGVVNVVDDTIPSEPMNDTVSGQFGLIGQQATDGYLGYAQLNGQLNDN WQWTGRFQKTDLDDVKVPKSRYDKVKNSWYKQDNASVGFAYVDELDYVGFSYQRQDSDYGLPFHVHNHCQPDEHRINRLT CGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEHEHEHDEHEHDEHDHDEHEHHHEHGELPYVKLKSD VYQIQTEHLVPLTGIDKLATKFSYTDYQHDEIDEGVVGTTFKNKAFGATVQATHATHQVGNLGYMKGIIGVDYANSKFSA QGLEAYLPKTRRNQLGTYIIERLTPTYSGAQINDAGRLGAQSSKTQQDNLGHNHGSSTLPTDSTATKLAKQGKDLWYVQF GGRQDIQKIEDMDNNISKSDSAHSLSLEAGRYLTPTTQISARVSHSERLPASQELYANGAHLATNTWERGNLQLDKESTD GIELSLRYDNNKNFDLSTSVFYNDTDDYIYAKTQDLVTEGESKGFRLVDYHQSDAKHYGGEIKARYYLNDYISIGGFSDI AIIELKDKQLDSKYAPRLAAPRVGGDITAQFNQFDVVLSGYHRYKQDKVADFEHTTPSYNMLDAKVTYHSAGPQDYTAFL QVSNLLNDLAYNHSSYLVEHMPLAERSFNAGITYRF
Sequences:
>Translated_836_residues MLTNYQNHQPPKRPTNCPLSPLMMSIRLYTQAICIQNRTLPAASAKLPYLLQAATLVALGAYSTAALAEDKPSVELAPVV VTASAFEPQAGDMATATSVITQSQIMQQGKSTLGDALANEPGVNSDTFGQGATRPIIRGQTAPRVQVAQNGILVQDASQI SPDHQVSVPVLGAKQIEVIKGSSALMYGGGAIGGVVNVVDDTIPSEPMNDTVSGQFGLIGQQATDGYLGYAQLNGQLNDN WQWTGRFQKTDLDDVKVPKSRYDKVKNSWYKQDNASVGFAYVDELDYVGFSYQRQDSDYGLPFHVHNHCQPDEHRINRLT CGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEHEHEHDEHEHDEHDHDEHEHHHEHGELPYVKLKSD VYQIQTEHLVPLTGIDKLATKFSYTDYQHDEIDEGVVGTTFKNKAFGATVQATHATHQVGNLGYMKGIIGVDYANSKFSA QGLEAYLPKTRRNQLGTYIIERLTPTYSGAQINDAGRLGAQSSKTQQDNLGHNHGSSTLPTDSTATKLAKQGKDLWYVQF GGRQDIQKIEDMDNNISKSDSAHSLSLEAGRYLTPTTQISARVSHSERLPASQELYANGAHLATNTWERGNLQLDKESTD GIELSLRYDNNKNFDLSTSVFYNDTDDYIYAKTQDLVTEGESKGFRLVDYHQSDAKHYGGEIKARYYLNDYISIGGFSDI AIIELKDKQLDSKYAPRLAAPRVGGDITAQFNQFDVVLSGYHRYKQDKVADFEHTTPSYNMLDAKVTYHSAGPQDYTAFL QVSNLLNDLAYNHSSYLVEHMPLAERSFNAGITYRF >Mature_836_residues MLTNYQNHQPPKRPTNCPLSPLMMSIRLYTQAICIQNRTLPAASAKLPYLLQAATLVALGAYSTAALAEDKPSVELAPVV VTASAFEPQAGDMATATSVITQSQIMQQGKSTLGDALANEPGVNSDTFGQGATRPIIRGQTAPRVQVAQNGILVQDASQI SPDHQVSVPVLGAKQIEVIKGSSALMYGGGAIGGVVNVVDDTIPSEPMNDTVSGQFGLIGQQATDGYLGYAQLNGQLNDN WQWTGRFQKTDLDDVKVPKSRYDKVKNSWYKQDNASVGFAYVDELDYVGFSYQRQDSDYGLPFHVHNHCQPDEHRINRLT CGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEHEHEHDEHEHDEHDHDEHEHHHEHGELPYVKLKSD VYQIQTEHLVPLTGIDKLATKFSYTDYQHDEIDEGVVGTTFKNKAFGATVQATHATHQVGNLGYMKGIIGVDYANSKFSA QGLEAYLPKTRRNQLGTYIIERLTPTYSGAQINDAGRLGAQSSKTQQDNLGHNHGSSTLPTDSTATKLAKQGKDLWYVQF GGRQDIQKIEDMDNNISKSDSAHSLSLEAGRYLTPTTQISARVSHSERLPASQELYANGAHLATNTWERGNLQLDKESTD GIELSLRYDNNKNFDLSTSVFYNDTDDYIYAKTQDLVTEGESKGFRLVDYHQSDAKHYGGEIKARYYLNDYISIGGFSDI AIIELKDKQLDSKYAPRLAAPRVGGDITAQFNQFDVVLSGYHRYKQDKVADFEHTTPSYNMLDAKVTYHSAGPQDYTAFL QVSNLLNDLAYNHSSYLVEHMPLAERSFNAGITYRF
Specific function: Probable receptor, tonB-dependent [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=167, Percent_Identity=29.940119760479, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788478, Length=278, Percent_Identity=27.6978417266187, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93104; Mature: 93104
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTNYQNHQPPKRPTNCPLSPLMMSIRLYTQAICIQNRTLPAASAKLPYLLQAATLVALG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH AYSTAALAEDKPSVELAPVVVTASAFEPQAGDMATATSVITQSQIMQQGKSTLGDALANE CCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGVNSDTFGQGATRPIIRGQTAPRVQVAQNGILVQDASQISPDHQVSVPVLGAKQIEVIK CCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEECHHHCCCCCEEEEEEECCCEEEEEE GSSALMYGGGAIGGVVNVVDDTIPSEPMNDTVSGQFGLIGQQATDGYLGYAQLNGQLNDN CCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCC WQWTGRFQKTDLDDVKVPKSRYDKVKNSWYKQDNASVGFAYVDELDYVGFSYQRQDSDYG EEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCEEECCCCCCC LPFHVHNHCQPDEHRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEE CCEEECCCCCCHHHHHHHEECCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCHHHHCCCHH HGHQEHEHEHDEHEHDEHDHDEHEHHHEHGELPYVKLKSDVYQIQTEHLVPLTGIDKLAT CCCHHHHHCCHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHEHHCCCCCCCCHHHHHH KFSYTDYQHDEIDEGVVGTTFKNKAFGATVQATHATHQVGNLGYMKGIIGVDYANSKFSA HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHCCCHHHHHEEEEECCCCCCCC QGLEAYLPKTRRNQLGTYIIERLTPTYSGAQINDAGRLGAQSSKTQQDNLGHNHGSSTLP CCHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCCCC TDSTATKLAKQGKDLWYVQFGGRQDIQKIEDMDNNISKSDSAHSLSLEAGRYLTPTTQIS CCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEECCCHHHH ARVSHSERLPASQELYANGAHLATNTWERGNLQLDKESTDGIELSLRYDNNKNFDLSTSV EECCHHHCCCCCHHHHCCCCEEECCCCCCCCEEECCCCCCCEEEEEEECCCCCCEEEEEE FYNDTDDYIYAKTQDLVTEGESKGFRLVDYHQSDAKHYGGEIKARYYLNDYISIGGFSDI EECCCCCEEEEECHHHHHCCCCCCCEEEECCCCHHHHCCCCEEEEEEEECEEECCCCCCE AIIELKDKQLDSKYAPRLAAPRVGGDITAQFNQFDVVLSGYHRYKQDKVADFEHTTPSYN EEEEECCCCCCHHHCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCC MLDAKVTYHSAGPQDYTAFLQVSNLLNDLAYNHSSYLVEHMPLAERSFNAGITYRF EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCEEEEC >Mature Secondary Structure MLTNYQNHQPPKRPTNCPLSPLMMSIRLYTQAICIQNRTLPAASAKLPYLLQAATLVALG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH AYSTAALAEDKPSVELAPVVVTASAFEPQAGDMATATSVITQSQIMQQGKSTLGDALANE CCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGVNSDTFGQGATRPIIRGQTAPRVQVAQNGILVQDASQISPDHQVSVPVLGAKQIEVIK CCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEECHHHCCCCCEEEEEEECCCEEEEEE GSSALMYGGGAIGGVVNVVDDTIPSEPMNDTVSGQFGLIGQQATDGYLGYAQLNGQLNDN CCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEECCC WQWTGRFQKTDLDDVKVPKSRYDKVKNSWYKQDNASVGFAYVDELDYVGFSYQRQDSDYG EEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHCCCEEECCCCCCC LPFHVHNHCQPDEHRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEE CCEEECCCCCCHHHHHHHEECCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCHHHHCCCHH HGHQEHEHEHDEHEHDEHDHDEHEHHHEHGELPYVKLKSDVYQIQTEHLVPLTGIDKLAT CCCHHHHHCCHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHEHHCCCCCCCCHHHHHH KFSYTDYQHDEIDEGVVGTTFKNKAFGATVQATHATHQVGNLGYMKGIIGVDYANSKFSA HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHCCCHHHHHEEEEECCCCCCCC QGLEAYLPKTRRNQLGTYIIERLTPTYSGAQINDAGRLGAQSSKTQQDNLGHNHGSSTLP CCHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCCCC TDSTATKLAKQGKDLWYVQFGGRQDIQKIEDMDNNISKSDSAHSLSLEAGRYLTPTTQIS CCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEECCCHHHH ARVSHSERLPASQELYANGAHLATNTWERGNLQLDKESTDGIELSLRYDNNKNFDLSTSV EECCHHHCCCCCHHHHCCCCEEECCCCCCCCEEECCCCCCCEEEEEEECCCCCCEEEEEE FYNDTDDYIYAKTQDLVTEGESKGFRLVDYHQSDAKHYGGEIKARYYLNDYISIGGFSDI EECCCCCEEEEECHHHHHCCCCCCCEEEECCCCHHHHCCCCEEEEEEEECEEECCCCCCE AIIELKDKQLDSKYAPRLAAPRVGGDITAQFNQFDVVLSGYHRYKQDKVADFEHTTPSYN EEEEECCCCCCHHHCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCC MLDAKVTYHSAGPQDYTAFLQVSNLLNDLAYNHSSYLVEHMPLAERSFNAGITYRF EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]