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The map label for this gene is ymdC [H]

Identifier: 148654130

GI number: 148654130

Start: 2900764

End: 2902308

Strand: Direct

Name: ymdC [H]

Synonym: PsycPRwf_2333

Alternate gene names: 148654130

Gene position: 2900764-2902308 (Clockwise)

Preceding gene: 148654129

Following gene: 148654135

Centisome position: 97.37

GC content: 48.16

Gene sequence:

>1545_bases
ATGTTAATAAAGGCGTTAAAAACAATCTTGCTATTTAGTGTGGGTTTCATTGCGCTCTTGAGCCTTTTGGCACTAGTGAC
TCATCAAAGCTTGCCTGACCATCAGTCACACACCGCCTCTCGCCATTTAGCAGTCGACCCTAGTAGCTTTTTGGCACAGC
GGCTACTGCCTTTATTGCAGCAGCATCCGGGCTTAAGTGGCATTTATTTATTGGATGATAGCCACGAGGCCTTTTTGGCC
CGATTGGCATTGGCAGCGTCTGCACAAGACACCTTAGATGTGCAATATTACATCTGGCATGATGACACCACAGGTCACTT
GCTCATGCAAAGCTTGTACCAAGCCGCTGAGCGCGGAGTTCAGGTGCGTTTGTTGCTCGATGACAATAACACTGGCGGCA
TGGATCCGCTGCTGGCCAGCATCGATGCGCATCCCAATATTGAGGTTCGGCTATTTAACCCCTTTATGCAGCGTACCCTT
CGGCCTTTGGGCTATCTTAGTGACTTCTTTAGGCTAAATCGGCGCATGCACAATAAGTCTTTTACAGCAGATGGTCTGGT
GACCATAGCGGGCGGGCGTAACGTCGGTGATGAATATTTTGGCTTTGGTAGTGGGGTAATGTTTGCAGATTTAGACATGG
CGGCTGTTGGACCCGTGGCCGAAGATGTAGAGCAAGACTTTGACCGCTACTGGGCAAGTCAGTCTGCTTATCCGCTCCAA
AGCATCATTAAGCAACACGCCCCCGCGCCTTTTGATACCACACCTGCAACCGACAAACAAACGCAGATTTTCTTAAAAGA
GCTGGGAGAGTCCAGCTTTGTCAAACAACTTCGTGAAGGCTCATTGCCGCTAATTTGGACTCAGGTACGGCTGATTAGTG
ATGACCCTGCAAAGGGATTACAAAAATCGAAAGAGACGGACTCGGTACTGGCTCATCTTGTTCCCTTAATGCAGGGCACC
CGTGAGGAGCTACTGATAATCTCTCCCTATTTCGTACCCGCCAAGCAAGGTACTGCTCTGTTTCAGCGCCTGGCCCAACA
GGGCAAACAAGTCGCCGTCCTCACCAATTCTCTAGCCGCAACCGATGTTATTCCGGTACATGCCGGCTATGCCAAATATC
GCAAACCACTGTTACGCGCCGGCATCGCCTTATATGAGCTTAAACCGCAGGCCACAGTCATCACCAAAAATCATGGCGGT
ATTCTTAAAAGCAGTGGTGCCAGCTTACATGCTAAGACCTTTATTATTGATAATAAAACGCTGTTTGTGGGCTCTTTTAA
TATGGACCCTCGTTCTGCTGCATTAAATACAGAAATGGGCTTTGTGTTTGATAGCGAGCAGATGGCAAGTTATCTGGCAG
ACAATATGAAGCAAAAACAAATGGAGTACAGTTATAAGGTGAGCAAAACCCCGCAAGGTAAATTACACTGGCAGACCTTA
GATGACGGTAATACTGTCGAGTATGATAACGAGCCACACAGTAGCCTATTTTCTCGACTTGGCGTTTGGGTGTGCTCTTT
GCTGCCTATTGAGTGGCTATTGTAG

Upstream 100 bases:

>100_bases
GCTCTAGCGGGCTTTTTTGTGACTACCCTTTTGCTATTATGACTCAAGCCCCGCTTCTTTTATCACACCACACTGTCTGT
TATCTCAAAAGAGCCACCTT

Downstream 100 bases:

>100_bases
GGCTTACATACCGGCTGAAGCCTTGAAGCAAAAGACAAGCCCTAAAAAATCCGCCCAACACATAAGTTGGGCGGATTTTT
TACTTTATACGTCCCGTGAC

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MLIKALKTILLFSVGFIALLSLLALVTHQSLPDHQSHTASRHLAVDPSSFLAQRLLPLLQQHPGLSGIYLLDDSHEAFLA
RLALAASAQDTLDVQYYIWHDDTTGHLLMQSLYQAAERGVQVRLLLDDNNTGGMDPLLASIDAHPNIEVRLFNPFMQRTL
RPLGYLSDFFRLNRRMHNKSFTADGLVTIAGGRNVGDEYFGFGSGVMFADLDMAAVGPVAEDVEQDFDRYWASQSAYPLQ
SIIKQHAPAPFDTTPATDKQTQIFLKELGESSFVKQLREGSLPLIWTQVRLISDDPAKGLQKSKETDSVLAHLVPLMQGT
REELLIISPYFVPAKQGTALFQRLAQQGKQVAVLTNSLAATDVIPVHAGYAKYRKPLLRAGIALYELKPQATVITKNHGG
ILKSSGASLHAKTFIIDNKTLFVGSFNMDPRSAALNTEMGFVFDSEQMASYLADNMKQKQMEYSYKVSKTPQGKLHWQTL
DDGNTVEYDNEPHSSLFSRLGVWVCSLLPIEWLL

Sequences:

>Translated_514_residues
MLIKALKTILLFSVGFIALLSLLALVTHQSLPDHQSHTASRHLAVDPSSFLAQRLLPLLQQHPGLSGIYLLDDSHEAFLA
RLALAASAQDTLDVQYYIWHDDTTGHLLMQSLYQAAERGVQVRLLLDDNNTGGMDPLLASIDAHPNIEVRLFNPFMQRTL
RPLGYLSDFFRLNRRMHNKSFTADGLVTIAGGRNVGDEYFGFGSGVMFADLDMAAVGPVAEDVEQDFDRYWASQSAYPLQ
SIIKQHAPAPFDTTPATDKQTQIFLKELGESSFVKQLREGSLPLIWTQVRLISDDPAKGLQKSKETDSVLAHLVPLMQGT
REELLIISPYFVPAKQGTALFQRLAQQGKQVAVLTNSLAATDVIPVHAGYAKYRKPLLRAGIALYELKPQATVITKNHGG
ILKSSGASLHAKTFIIDNKTLFVGSFNMDPRSAALNTEMGFVFDSEQMASYLADNMKQKQMEYSYKVSKTPQGKLHWQTL
DDGNTVEYDNEPHSSLFSRLGVWVCSLLPIEWLL
>Mature_514_residues
MLIKALKTILLFSVGFIALLSLLALVTHQSLPDHQSHTASRHLAVDPSSFLAQRLLPLLQQHPGLSGIYLLDDSHEAFLA
RLALAASAQDTLDVQYYIWHDDTTGHLLMQSLYQAAERGVQVRLLLDDNNTGGMDPLLASIDAHPNIEVRLFNPFMQRTL
RPLGYLSDFFRLNRRMHNKSFTADGLVTIAGGRNVGDEYFGFGSGVMFADLDMAAVGPVAEDVEQDFDRYWASQSAYPLQ
SIIKQHAPAPFDTTPATDKQTQIFLKELGESSFVKQLREGSLPLIWTQVRLISDDPAKGLQKSKETDSVLAHLVPLMQGT
REELLIISPYFVPAKQGTALFQRLAQQGKQVAVLTNSLAATDVIPVHAGYAKYRKPLLRAGIALYELKPQATVITKNHGG
ILKSSGASLHAKTFIIDNKTLFVGSFNMDPRSAALNTEMGFVFDSEQMASYLADNMKQKQMEYSYKVSKTPQGKLHWQTL
DDGNTVEYDNEPHSSLFSRLGVWVCSLLPIEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=470, Percent_Identity=51.063829787234, Blast_Score=463, Evalue=1e-131,
Organism=Escherichia coli, GI1787007, Length=413, Percent_Identity=20.8232445520581, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57100; Mature: 57100

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKALKTILLFSVGFIALLSLLALVTHQSLPDHQSHTASRHLAVDPSSFLAQRLLPLLQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEECHHHHHHHHHHHHHH
QHPGLSGIYLLDDSHEAFLARLALAASAQDTLDVQYYIWHDDTTGHLLMQSLYQAAERGV
HCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCE
QVRLLLDDNNTGGMDPLLASIDAHPNIEVRLFNPFMQRTLRPLGYLSDFFRLNRRMHNKS
EEEEEEECCCCCCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
FTADGLVTIAGGRNVGDEYFGFGSGVMFADLDMAAVGPVAEDVEQDFDRYWASQSAYPLQ
CCCCCEEEEECCCCCCHHHHCCCCCCEEECCCHHHCCCHHHHHHHHHHHHHCCCCCCHHH
SIIKQHAPAPFDTTPATDKQTQIFLKELGESSFVKQLREGSLPLIWTQVRLISDDPAKGL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCHHHH
QKSKETDSVLAHLVPLMQGTREELLIISPYFVPAKQGTALFQRLAQQGKQVAVLTNSLAA
HHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCHHH
TDVIPVHAGYAKYRKPLLRAGIALYELKPQATVITKNHGGILKSSGASLHAKTFIIDNKT
HCEEECCCCHHHHHHHHHHCCEEEEEECCCEEEEEECCCCEEECCCCCEEEEEEEEECCE
LFVGSFNMDPRSAALNTEMGFVFDSEQMASYLADNMKQKQMEYSYKVSKTPQGKLHWQTL
EEEEECCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEC
DDGNTVEYDNEPHSSLFSRLGVWVCSLLPIEWLL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIKALKTILLFSVGFIALLSLLALVTHQSLPDHQSHTASRHLAVDPSSFLAQRLLPLLQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEECHHHHHHHHHHHHHH
QHPGLSGIYLLDDSHEAFLARLALAASAQDTLDVQYYIWHDDTTGHLLMQSLYQAAERGV
HCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCE
QVRLLLDDNNTGGMDPLLASIDAHPNIEVRLFNPFMQRTLRPLGYLSDFFRLNRRMHNKS
EEEEEEECCCCCCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
FTADGLVTIAGGRNVGDEYFGFGSGVMFADLDMAAVGPVAEDVEQDFDRYWASQSAYPLQ
CCCCCEEEEECCCCCCHHHHCCCCCCEEECCCHHHCCCHHHHHHHHHHHHHCCCCCCHHH
SIIKQHAPAPFDTTPATDKQTQIFLKELGESSFVKQLREGSLPLIWTQVRLISDDPAKGL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEEECCCCHHHH
QKSKETDSVLAHLVPLMQGTREELLIISPYFVPAKQGTALFQRLAQQGKQVAVLTNSLAA
HHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCHHH
TDVIPVHAGYAKYRKPLLRAGIALYELKPQATVITKNHGGILKSSGASLHAKTFIIDNKT
HCEEECCCCHHHHHHHHHHCCEEEEEECCCEEEEEECCCCEEECCCCCEEEEEEEEECCE
LFVGSFNMDPRSAALNTEMGFVFDSEQMASYLADNMKQKQMEYSYKVSKTPQGKLHWQTL
EEEEECCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEC
DDGNTVEYDNEPHSSLFSRLGVWVCSLLPIEWLL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]