| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is dfrA [H]
Identifier: 148654129
GI number: 148654129
Start: 2900030
End: 2900611
Strand: Direct
Name: dfrA [H]
Synonym: PsycPRwf_2332
Alternate gene names: 148654129
Gene position: 2900030-2900611 (Clockwise)
Preceding gene: 148654128
Following gene: 148654130
Centisome position: 97.35
GC content: 45.53
Gene sequence:
>582_bases ATGAGCTACGCCCACACTCAAGTTGCCCAAATTGTGGCCATTAGCCGCAACCGCTGTATCGGCAAGGGCAATGATTTGCC TTGGCATATCCCCAATGATTTAAAACACTTTAAGGCCATGACCACCGCTGAGACCGATGCTTATGTAGATACAGGCCTAA AAGGTATTGTCATTATGGGCCGTAAAACTTTTGAATCGATGGGCTCAAAGCCGCTGCCAAAACGAGTGAACTTCATTGTC ACCACTCAAATGGACTATGCGCAGCAAAAAGGGCTAGAAGGTCTTAAAGATGTGCATGTGGTGCATAACTTGGATGATGC TTTAACCCATGCAGCCAACGTCGCTCATGGCTTAAAGTTTGAAACTATTTGGGTTATCGGCGGCGAGCGTGTGTTTAAAC GTGCCATGATGTTCACCGACCGCATTGAGCTAACGGTTGTCGATACCGACATTGAAGACGGCGATGCATTTTACCCAGAG ATACCCGAAGACTTTGAACTCACTCAAGAATCTGAGTCATTTACTGATGAAAAAAGCGGCCTGAGCTATAAGTTTATGAC TTATATGGTCAAAAAGGGCTAA
Upstream 100 bases:
>100_bases CGCGGCATCAATAGATAGTTACAGCATAAATAGATAGCTTAGCCGCTATACGCCAAGCCGTTTATCAGACAATTGGTTAT TATTGATTAAGGATATTTGT
Downstream 100 bases:
>100_bases CCCTTGTTTAGTTGTTTGCTTCTAAAGACAGCTATTGTCTGAAGCCCGCTATGCTCTAGCGGGCTTTTTTGTGACTACCC TTTTGCTATTATGACTCAAG
Product: dihydrofolate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSYAHTQVAQIVAISRNRCIGKGNDLPWHIPNDLKHFKAMTTAETDAYVDTGLKGIVIMGRKTFESMGSKPLPKRVNFIV TTQMDYAQQKGLEGLKDVHVVHNLDDALTHAANVAHGLKFETIWVIGGERVFKRAMMFTDRIELTVVDTDIEDGDAFYPE IPEDFELTQESESFTDEKSGLSYKFMTYMVKKG
Sequences:
>Translated_193_residues MSYAHTQVAQIVAISRNRCIGKGNDLPWHIPNDLKHFKAMTTAETDAYVDTGLKGIVIMGRKTFESMGSKPLPKRVNFIV TTQMDYAQQKGLEGLKDVHVVHNLDDALTHAANVAHGLKFETIWVIGGERVFKRAMMFTDRIELTVVDTDIEDGDAFYPE IPEDFELTQESESFTDEKSGLSYKFMTYMVKKG >Mature_192_residues SYAHTQVAQIVAISRNRCIGKGNDLPWHIPNDLKHFKAMTTAETDAYVDTGLKGIVIMGRKTFESMGSKPLPKRVNFIVT TQMDYAQQKGLEGLKDVHVVHNLDDALTHAANVAHGLKFETIWVIGGERVFKRAMMFTDRIELTVVDTDIEDGDAFYPEI PEDFELTQESESFTDEKSGLSYKFMTYMVKKG
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Homo sapiens, GI4503323, Length=188, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI28827793, Length=184, Percent_Identity=33.1521739130435, Blast_Score=76, Evalue=2e-14, Organism=Escherichia coli, GI1786233, Length=180, Percent_Identity=32.7777777777778, Blast_Score=79, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17505899, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI116008026, Length=182, Percent_Identity=31.8681318681319, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24647458, Length=182, Percent_Identity=31.8681318681319, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 21782; Mature: 21651
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00075 DHFR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYAHTQVAQIVAISRNRCIGKGNDLPWHIPNDLKHFKAMTTAETDAYVDTGLKGIVIMG CCCCHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEC RKTFESMGSKPLPKRVNFIVTTQMDYAQQKGLEGLKDVHVVHNLDDALTHAANVAHGLKF CHHHHHCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE ETIWVIGGERVFKRAMMFTDRIELTVVDTDIEDGDAFYPEIPEDFELTQESESFTDEKSG EEEEEECCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCC LSYKFMTYMVKKG CCEEEEEEEEECC >Mature Secondary Structure SYAHTQVAQIVAISRNRCIGKGNDLPWHIPNDLKHFKAMTTAETDAYVDTGLKGIVIMG CCCHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEC RKTFESMGSKPLPKRVNFIVTTQMDYAQQKGLEGLKDVHVVHNLDDALTHAANVAHGLKF CHHHHHCCCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE ETIWVIGGERVFKRAMMFTDRIELTVVDTDIEDGDAFYPEIPEDFELTQESESFTDEKSG EEEEEECCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCC LSYKFMTYMVKKG CCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840350; 9384377 [H]