| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is icd [H]
Identifier: 148653883
GI number: 148653883
Start: 2602323
End: 2604542
Strand: Direct
Name: icd [H]
Synonym: PsycPRwf_2086
Alternate gene names: 148653883
Gene position: 2602323-2604542 (Clockwise)
Preceding gene: 148653879
Following gene: 148653884
Centisome position: 87.36
GC content: 45.41
Gene sequence:
>2220_bases ATGTCAAAAATTATTTATACCAAAACCGATGAAGCGCCAGCGCTTGCCACGTTATCACTGCTACCTATTGTTGAAGCCTT TACGAAGACAGCAGGTATTTCTGTTGAAACCAGCGATATTTCAGTTGCTGCGCGTATCCTAGCTGAATTCCCAGACTATC TAACCGAAGAGCAACGTGTTCCAGACAATCTAGCTGAGCTAGGTCGCCTGACCCAAGATCCTAATACCAACATCATCAAA CTGCCAAACATCAGTGCCTCAGTACAACAGCTTAAAGCAGCCATTAAAGAGCTTCAAGACAAAGGCTATGCGATTCCTGA TTTTCCAGAAGACCCAAAAACTGAAGAAGAAGAAACGCTGCGCAAACGCTATGGTAAAGCTCTTGGTAGTGCCGTAAACC CAGTACTTCGCGAAGGTAACTCAGATCGCCGTGCACCAAAAGCGGTGAAAAACTACGCGCGCAAACATCCGCATTCAATG GGTGAATGGAAGCAGTGGTCAAGCACGCACGTCTCACACATGCACAGTGGTGACTTCTACCACGGTGAGCAGTCTATGAC GCTAGACAAGGCGCGTAACGTACGTATGGAGCTACAACTTGACGATGGCTCAACCAAAGTACTTAAGCCTGAGATTGCGT TAAAAGACAAAGAAATTATCGACTTAATGTTCATGAGCAAAAAAGCTTTGCTTGAGTTCTATGAGCGTGAAATGGAAGAC TGCCGCGACGCAGGTATCTTGTTCTCTTTACACGTAAAAGCGACCATGATGAAGGTATCTCACCCCATCGTATTTGGTCA TGCAGTACGTATTTATTATAAAGAAGCCTTCGAAAAACATGGCGAGCTGTTCGAAGAGCTTGGTATTAACGTAAACAACG GTATGGCCGATCTTTACGAGAAGATCAAAACATTGCCTGCCTCTAAGCGCGAAGAGATCGAACAAGACTTGCATGCCTGC CAAGAACATCGCCCCCGTCTGGCCATGGTAGACTCTTCAAAAGGCATCACCAACTTCCATTCTCCAAGTGACGTTATCGT AGATGCTTCAATGCCTGCTATGATTCGTAACGGCGGTAAAATGTGGGGTGCTGATGGCAAGATGTATGACTGTAAAGCGG TCATGCCTGAGTCAACTTTTGCGCGTATCTATCAAGAGATGATCAACTTCTGTAAATGGCATGGTAACTTTGACCCAACC ACTATGGGTACGGTACCAAACGTGGGTCTAATGGCTCAAAAAGCAGAAGAGTACGGCTCACATGACAAAACCTTTGAATC AAGTGATGCAGGCATGGCTCGTATTGTCGATAATGAGACAGGTGAAGTACTGCTTGAGCAGCATGTTGAAAAAGGCGATA TCTGGCGTATGTGTCAGGTGAAAGATGAGCCTATCCAAGACTGGGTAAAACTTGCCGTTCGCCGCGCTCGTGAGTCAGAT ACCCCTGTGGTCTTCTGGTTAGACCCTTACCGTCCTCATGAAAATGAGCTGATTAAAAAAGTAAAAACTTACTTAAATGA TCATGACACGGAAAGTCTACGCATCGAAATCATGTCACAAGTACGTGCAATGCGTTATACGCTAGAGCGTGTGGCACGTG GTCTAGACACTATTTCAGCCACAGGTAACATCCTACGCGACTACCTGACTGATTTATTCCCAATTTTAGAGCTGGGCACC AGTGCGAAAATGTTATCCGTGGTACCATTAATGAAGGGCGGCGGTCTATTTGAAACCGGTGCTGGTGGTTCTGCGCCTAA GCACGTTCAGCAATTGCTAGAAGAAAACCACTTACGTTGGGACTCTTTGGGTGAATTCTTAGCGTTAACTGTGTCATTAG AGCACTTGGCCAACAACGATGACAATGCCAAAGCTAAGCTATTGGCAGAGACGCTAGACCGAGCCATTGAGAAGCTGTTA ATTAACAACAAGTCACCTTCTCGCTCAACGGGTGAGATTGATAACCGTGGCAGTCACTTCTATCTGGCCATGTACTGGGC TCAAGAGCTTGCCGCTCAGGACAAAGACGCTGAGTTAAAAGCTCAATTTACGCCTGTAGCTGAGCAGCTTACCAACAATG AAGCAACCATCATTAAAGAACTTAATGAAGTACAAGGTAAGCCTGTAGACATTCATGGCTACTATTTTGCTGATGAAGAT TTGGCTCAAAAAGTTATGCGCCCAAGCAAAACTTTTAATGAAGCTATCGCTTCTATCTAA
Upstream 100 bases:
>100_bases GACTTCCCCCTTTCATAGCTCATTGTTGCCCATCACAATTGAGCTATTTGACAATTTAAGCTTTCTTATTCACTACAGCC TAAAGGAACCTATTACTATA
Downstream 100 bases:
>100_bases GTTTAGGTACTTATTTAAGTATTTTTCACAGCTTAAAGCTAAGCCCATTTAGTTAAAGCGATTCTGCTTTATCTAAAAAA ATACCCTAAGAGCAGTCTCT
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 739; Mature: 738
Protein sequence:
>739_residues MSKIIYTKTDEAPALATLSLLPIVEAFTKTAGISVETSDISVAARILAEFPDYLTEEQRVPDNLAELGRLTQDPNTNIIK LPNISASVQQLKAAIKELQDKGYAIPDFPEDPKTEEEETLRKRYGKALGSAVNPVLREGNSDRRAPKAVKNYARKHPHSM GEWKQWSSTHVSHMHSGDFYHGEQSMTLDKARNVRMELQLDDGSTKVLKPEIALKDKEIIDLMFMSKKALLEFYEREMED CRDAGILFSLHVKATMMKVSHPIVFGHAVRIYYKEAFEKHGELFEELGINVNNGMADLYEKIKTLPASKREEIEQDLHAC QEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPT TMGTVPNVGLMAQKAEEYGSHDKTFESSDAGMARIVDNETGEVLLEQHVEKGDIWRMCQVKDEPIQDWVKLAVRRARESD TPVVFWLDPYRPHENELIKKVKTYLNDHDTESLRIEIMSQVRAMRYTLERVARGLDTISATGNILRDYLTDLFPILELGT SAKMLSVVPLMKGGGLFETGAGGSAPKHVQQLLEENHLRWDSLGEFLALTVSLEHLANNDDNAKAKLLAETLDRAIEKLL INNKSPSRSTGEIDNRGSHFYLAMYWAQELAAQDKDAELKAQFTPVAEQLTNNEATIIKELNEVQGKPVDIHGYYFADED LAQKVMRPSKTFNEAIASI
Sequences:
>Translated_739_residues MSKIIYTKTDEAPALATLSLLPIVEAFTKTAGISVETSDISVAARILAEFPDYLTEEQRVPDNLAELGRLTQDPNTNIIK LPNISASVQQLKAAIKELQDKGYAIPDFPEDPKTEEEETLRKRYGKALGSAVNPVLREGNSDRRAPKAVKNYARKHPHSM GEWKQWSSTHVSHMHSGDFYHGEQSMTLDKARNVRMELQLDDGSTKVLKPEIALKDKEIIDLMFMSKKALLEFYEREMED CRDAGILFSLHVKATMMKVSHPIVFGHAVRIYYKEAFEKHGELFEELGINVNNGMADLYEKIKTLPASKREEIEQDLHAC QEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPT TMGTVPNVGLMAQKAEEYGSHDKTFESSDAGMARIVDNETGEVLLEQHVEKGDIWRMCQVKDEPIQDWVKLAVRRARESD TPVVFWLDPYRPHENELIKKVKTYLNDHDTESLRIEIMSQVRAMRYTLERVARGLDTISATGNILRDYLTDLFPILELGT SAKMLSVVPLMKGGGLFETGAGGSAPKHVQQLLEENHLRWDSLGEFLALTVSLEHLANNDDNAKAKLLAETLDRAIEKLL INNKSPSRSTGEIDNRGSHFYLAMYWAQELAAQDKDAELKAQFTPVAEQLTNNEATIIKELNEVQGKPVDIHGYYFADED LAQKVMRPSKTFNEAIASI >Mature_738_residues SKIIYTKTDEAPALATLSLLPIVEAFTKTAGISVETSDISVAARILAEFPDYLTEEQRVPDNLAELGRLTQDPNTNIIKL PNISASVQQLKAAIKELQDKGYAIPDFPEDPKTEEEETLRKRYGKALGSAVNPVLREGNSDRRAPKAVKNYARKHPHSMG EWKQWSSTHVSHMHSGDFYHGEQSMTLDKARNVRMELQLDDGSTKVLKPEIALKDKEIIDLMFMSKKALLEFYEREMEDC RDAGILFSLHVKATMMKVSHPIVFGHAVRIYYKEAFEKHGELFEELGINVNNGMADLYEKIKTLPASKREEIEQDLHACQ EHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTT MGTVPNVGLMAQKAEEYGSHDKTFESSDAGMARIVDNETGEVLLEQHVEKGDIWRMCQVKDEPIQDWVKLAVRRARESDT PVVFWLDPYRPHENELIKKVKTYLNDHDTESLRIEIMSQVRAMRYTLERVARGLDTISATGNILRDYLTDLFPILELGTS AKMLSVVPLMKGGGLFETGAGGSAPKHVQQLLEENHLRWDSLGEFLALTVSLEHLANNDDNAKAKLLAETLDRAIEKLLI NNKSPSRSTGEIDNRGSHFYLAMYWAQELAAQDKDAELKAQFTPVAEQLTNNEATIIKELNEVQGKPVDIHGYYFADEDL AQKVMRPSKTFNEAIASI
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 83335; Mature: 83204
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIIYTKTDEAPALATLSLLPIVEAFTKTAGISVETSDISVAARILAEFPDYLTEEQRV CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHCC PDNLAELGRLTQDPNTNIIKLPNISASVQQLKAAIKELQDKGYAIPDFPEDPKTEEEETL CHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RKRYGKALGSAVNPVLREGNSDRRAPKAVKNYARKHPHSMGEWKQWSSTHVSHMHSGDFY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC HGEQSMTLDKARNVRMELQLDDGSTKVLKPEIALKDKEIIDLMFMSKKALLEFYEREMED CCCCCCCHHHCCCEEEEEEECCCCCEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH CRDAGILFSLHVKATMMKVSHPIVFGHAVRIYYKEAFEKHGELFEELGINVNNGMADLYE HHCCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH KIKTLPASKREEIEQDLHACQEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGK HHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHCCCC MWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGS EECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC HDKTFESSDAGMARIVDNETGEVLLEQHVEKGDIWRMCQVKDEPIQDWVKLAVRRARESD CCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHCCC TPVVFWLDPYRPHENELIKKVKTYLNDHDTESLRIEIMSQVRAMRYTLERVARGLDTISA CCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGNILRDYLTDLFPILELGTSAKMLSVVPLMKGGGLFETGAGGSAPKHVQQLLEENHLRW HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCH DSLGEFLALTVSLEHLANNDDNAKAKLLAETLDRAIEKLLINNKSPSRSTGEIDNRGSHF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE YLAMYWAQELAAQDKDAELKAQFTPVAEQLTNNEATIIKELNEVQGKPVDIHGYYFADED EEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCHH LAQKVMRPSKTFNEAIASI HHHHHHCCCHHHHHHHHCC >Mature Secondary Structure SKIIYTKTDEAPALATLSLLPIVEAFTKTAGISVETSDISVAARILAEFPDYLTEEQRV CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHCC PDNLAELGRLTQDPNTNIIKLPNISASVQQLKAAIKELQDKGYAIPDFPEDPKTEEEETL CHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RKRYGKALGSAVNPVLREGNSDRRAPKAVKNYARKHPHSMGEWKQWSSTHVSHMHSGDFY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC HGEQSMTLDKARNVRMELQLDDGSTKVLKPEIALKDKEIIDLMFMSKKALLEFYEREMED CCCCCCCHHHCCCEEEEEEECCCCCEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH CRDAGILFSLHVKATMMKVSHPIVFGHAVRIYYKEAFEKHGELFEELGINVNNGMADLYE HHCCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH KIKTLPASKREEIEQDLHACQEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGK HHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHCCCC MWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGS EECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC HDKTFESSDAGMARIVDNETGEVLLEQHVEKGDIWRMCQVKDEPIQDWVKLAVRRARESD CCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHHCCCCCHHHHHHHHHHHHHHCCC TPVVFWLDPYRPHENELIKKVKTYLNDHDTESLRIEIMSQVRAMRYTLERVARGLDTISA CCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGNILRDYLTDLFPILELGTSAKMLSVVPLMKGGGLFETGAGGSAPKHVQQLLEENHLRW HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCH DSLGEFLALTVSLEHLANNDDNAKAKLLAETLDRAIEKLLINNKSPSRSTGEIDNRGSHF HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE YLAMYWAQELAAQDKDAELKAQFTPVAEQLTNNEATIIKELNEVQGKPVDIHGYYFADED EEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCHH LAQKVMRPSKTFNEAIASI HHHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]