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The map label for this gene is rbcR [H]

Identifier: 148653734

GI number: 148653734

Start: 2403943

End: 2404818

Strand: Direct

Name: rbcR [H]

Synonym: PsycPRwf_1937

Alternate gene names: 148653734

Gene position: 2403943-2404818 (Clockwise)

Preceding gene: 148653729

Following gene: 148653736

Centisome position: 80.7

GC content: 46.46

Gene sequence:

>876_bases
ATGAATACCACAAATTTGACCACCTTTATCACTGTAATGCAAACGGGCAGTATTTCGGGCGCGGCTGAAAAACTTTTTAT
CACCCAACCTGCTGTCAGTAAGCGCATAAAAAACCTTGAAGATGAGTTTAAGGTTACCTTATTTGATACCTTAGGTCGTG
GTATCGTGCCCACCGCTGCTGCTAATGAGCTACTGCCGCACGCCAAACGCTGGCTGGATGATTACGATAACTTCAAGATC
AATATCCAAAACTCTCAGCAAACCATTTCGGGAAAACTGGTCATTGGTACCAGTCACCATATCGGTCTTCATCACCTATC
TCCAGTACTAAAACAGTTTATCCAGACCTATCCGTCTGTGCAGCTAGAGGTGCACTTTGTAGACTCAGAAGCGGCACACA
AAGCGGTGTTAGATGGTGAGCTGTCATTGGCCTTTTTGACCCTACCCCCTGTGTATGACAAACGCCTGACTTATCATACA
CTTTGGTCAGACCCCCTGTTTTTTGTGACGGGGACCTTGTCGCCTTTAGCACAAAAATCCAATGTCACCTTAGAGCAACT
GGCACACTACTCAGCCATCTTGCCGGCAGCCAATACGTTCACCAGTCAGATTACTTTGGCAGAGTTTGCCAAACAAAACC
TAAAACCGTATGCCACCATGACTACCAACCCTCTAGAGTCTATTCGTATGCTGGTATCGGTCGGTCTAGGTTGGTCAGTA
TTACCGCAAACCTTGATCAACCACGAGTTGGCCTACGTTGATATGGCAAAGGATTTAGAATTACAGCGGCATCTTGGGGT
GGTCATCAACCCAAGCTTAACCCGCTCAGCCAGTGTTGATGCGTTAATGCAAATGCTGGCACCTATTAGCTCATAA

Upstream 100 bases:

>100_bases
TAACAGCTTAGTTATATAATAATAATTGATGATTTTTATCATAAAGCAAACTTTATATTATACTTAAACTTTTAACCCTT
TTGATAGTTTTAGGCTGACC

Downstream 100 bases:

>100_bases
GTAACTAATAAGTAGCCAATAAGCCCCCTTCTTAATTTATTTGCCGCTTTATTGAGCTAATCAGTTAGCGTGCCACTTTT
AGCTTCCTATATGCTTTCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNTTNLTTFITVMQTGSISGAAEKLFITQPAVSKRIKNLEDEFKVTLFDTLGRGIVPTAAANELLPHAKRWLDDYDNFKI
NIQNSQQTISGKLVIGTSHHIGLHHLSPVLKQFIQTYPSVQLEVHFVDSEAAHKAVLDGELSLAFLTLPPVYDKRLTYHT
LWSDPLFFVTGTLSPLAQKSNVTLEQLAHYSAILPAANTFTSQITLAEFAKQNLKPYATMTTNPLESIRMLVSVGLGWSV
LPQTLINHELAYVDMAKDLELQRHLGVVINPSLTRSASVDALMQMLAPISS

Sequences:

>Translated_291_residues
MNTTNLTTFITVMQTGSISGAAEKLFITQPAVSKRIKNLEDEFKVTLFDTLGRGIVPTAAANELLPHAKRWLDDYDNFKI
NIQNSQQTISGKLVIGTSHHIGLHHLSPVLKQFIQTYPSVQLEVHFVDSEAAHKAVLDGELSLAFLTLPPVYDKRLTYHT
LWSDPLFFVTGTLSPLAQKSNVTLEQLAHYSAILPAANTFTSQITLAEFAKQNLKPYATMTTNPLESIRMLVSVGLGWSV
LPQTLINHELAYVDMAKDLELQRHLGVVINPSLTRSASVDALMQMLAPISS
>Mature_291_residues
MNTTNLTTFITVMQTGSISGAAEKLFITQPAVSKRIKNLEDEFKVTLFDTLGRGIVPTAAANELLPHAKRWLDDYDNFKI
NIQNSQQTISGKLVIGTSHHIGLHHLSPVLKQFIQTYPSVQLEVHFVDSEAAHKAVLDGELSLAFLTLPPVYDKRLTYHT
LWSDPLFFVTGTLSPLAQKSNVTLEQLAHYSAILPAANTFTSQITLAEFAKQNLKPYATMTTNPLESIRMLVSVGLGWSV
LPQTLINHELAYVDMAKDLELQRHLGVVINPSLTRSASVDALMQMLAPISS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=232, Percent_Identity=26.2931034482759, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=23.6734693877551, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788481, Length=246, Percent_Identity=28.4552845528455, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787530, Length=237, Percent_Identity=28.6919831223629, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787879, Length=263, Percent_Identity=26.9961977186312, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=250, Percent_Identity=28.4, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=25.7028112449799, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=239, Percent_Identity=25.5230125523013, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082132, Length=253, Percent_Identity=25.296442687747, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789506, Length=199, Percent_Identity=28.643216080402, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=22.0216606498195, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=192, Percent_Identity=25.5208333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789440, Length=122, Percent_Identity=29.5081967213115, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=250, Percent_Identity=22.4, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32148; Mature: 32148

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTNLTTFITVMQTGSISGAAEKLFITQPAVSKRIKNLEDEFKVTLFDTLGRGIVPTAA
CCCCCCEEEEEEEECCCCCCCHHEEEEECHHHHHHHHCCHHHHEEEEHHHCCCCCCCCHH
ANELLPHAKRWLDDYDNFKINIQNSQQTISGKLVIGTSHHIGLHHLSPVLKQFIQTYPSV
HHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
QLEVHFVDSEAAHKAVLDGELSLAFLTLPPVYDKRLTYHTLWSDPLFFVTGTLSPLAQKS
EEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCHHHHCC
NVTLEQLAHYSAILPAANTFTSQITLAEFAKQNLKPYATMTTNPLESIRMLVSVGLGWSV
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCHHH
LPQTLINHELAYVDMAKDLELQRHLGVVINPSLTRSASVDALMQMLAPISS
HHHHHHCCCHHEEEHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTTNLTTFITVMQTGSISGAAEKLFITQPAVSKRIKNLEDEFKVTLFDTLGRGIVPTAA
CCCCCCEEEEEEEECCCCCCCHHEEEEECHHHHHHHHCCHHHHEEEEHHHCCCCCCCCHH
ANELLPHAKRWLDDYDNFKINIQNSQQTISGKLVIGTSHHIGLHHLSPVLKQFIQTYPSV
HHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
QLEVHFVDSEAAHKAVLDGELSLAFLTLPPVYDKRLTYHTLWSDPLFFVTGTLSPLAQKS
EEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCHHHHCC
NVTLEQLAHYSAILPAANTFTSQITLAEFAKQNLKPYATMTTNPLESIRMLVSVGLGWSV
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCHHH
LPQTLINHELAYVDMAKDLELQRHLGVVINPSLTRSASVDALMQMLAPISS
HHHHHHCCCHHEEEHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]