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The map label for this gene is rarD [C]

Identifier: 148653646

GI number: 148653646

Start: 2301746

End: 2302738

Strand: Direct

Name: rarD [C]

Synonym: PsycPRwf_1849

Alternate gene names: 148653646

Gene position: 2301746-2302738 (Clockwise)

Preceding gene: 148653645

Following gene: 148653647

Centisome position: 77.27

GC content: 46.93

Gene sequence:

>993_bases
ATGTCAAAATCACCCTTAATCTCCCGCCTGCCCTTTATCTCGATTTGGGCCGACAGCGATGCTCAGCAGCGTACGGCGCT
AAAGGGCGTGATTTTGGCCATTGTTTCAAACTTATTATTCGGCGTGCTTTATTTTTATAGCAGTCTTTTGCAGCCATTAA
CCGGCACTCAGGTATTTATCTGGCGCATGCTGTCTATGTGGGTGGTGCTGGTTGGTTTTTTGGCAATAACTGGCAGGCTC
AGCTTTCATATCAATCGCTTGCGTGAGCTAAGCAGCTTTAAGCAGTGGCTGTGGCTACTATTACCCACACCCATATTTTT
TAGTCAGCTGTGGCTATTTATGTGGGCACCGGTCAATGATCAAGGCGTGCAAGTGGCCATGGGCTACTTTTTGTTTCCGC
TAATGATGGTGGTGTTTGGTTTTATTTTTTTTGGTGAGCGCTTAAGCCGGTTGCAGTGGTTGGCGGTATTGTTTGCCATG
CTGGGTATTGGCCTTGAAATGCTACGTACCCAAAGTGTGTCTTGGGCCACGCTATGGGTGTGCGGCACCTACCCTATTTA
CTACATCCTGCGCCGCTTGCAGGGCATAACGGCGATGACGGGGATGCTGGTCGATTTGAGTTTATTTTTGCCCATTGCAA
TAGGCTATCTGGTAATAGCAGCGCCTGGTAACTTTATGTTTGTGACCGGATCTGGGCTGTATTTTATGTTGGTTGCAAGC
TTAGGTGTAATTAGCGTATTGGCCTTAAAGACCAATATTGATGCCAGCCAAATACTGCCAGTCAATGTGTTTGGTATGAT
GAGTTACCTAGAGCCTTTAGTGCTGTTTGTATTGGCAATTACCGTGCTCGGTGATAGCTTTGAGACCAGTATGCTCTATA
GCTATGGCTTTATTTGGCTGGGCATTATGTTCTTGATTGCTCATGGTATACAACAAATACGCGCCAATAGACGCAGCCCC
AAACCTTGGCAAAAAGGGGCTCGGGTCAGTTAG

Upstream 100 bases:

>100_bases
CCAAGTTTAGTGTTTGAAATAAAGACAGTGCCCTTTGAAGATGGTCGCTCTTTAAGACAGCCTGCTTTTACCACAATGCT
TTTTTTAGTTGAGTGCCTTT

Downstream 100 bases:

>100_bases
TTCAGCTCGCTTGCTCATGTCAGTGATCTAAGCAATATAGATGCCCCATATCAGCAAACATTAAAAAATAAAAAGATACC
GAGCTTGAACCTAACTTCAC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSKSPLISRLPFISIWADSDAQQRTALKGVILAIVSNLLFGVLYFYSSLLQPLTGTQVFIWRMLSMWVVLVGFLAITGRL
SFHINRLRELSSFKQWLWLLLPTPIFFSQLWLFMWAPVNDQGVQVAMGYFLFPLMMVVFGFIFFGERLSRLQWLAVLFAM
LGIGLEMLRTQSVSWATLWVCGTYPIYYILRRLQGITAMTGMLVDLSLFLPIAIGYLVIAAPGNFMFVTGSGLYFMLVAS
LGVISVLALKTNIDASQILPVNVFGMMSYLEPLVLFVLAITVLGDSFETSMLYSYGFIWLGIMFLIAHGIQQIRANRRSP
KPWQKGARVS

Sequences:

>Translated_330_residues
MSKSPLISRLPFISIWADSDAQQRTALKGVILAIVSNLLFGVLYFYSSLLQPLTGTQVFIWRMLSMWVVLVGFLAITGRL
SFHINRLRELSSFKQWLWLLLPTPIFFSQLWLFMWAPVNDQGVQVAMGYFLFPLMMVVFGFIFFGERLSRLQWLAVLFAM
LGIGLEMLRTQSVSWATLWVCGTYPIYYILRRLQGITAMTGMLVDLSLFLPIAIGYLVIAAPGNFMFVTGSGLYFMLVAS
LGVISVLALKTNIDASQILPVNVFGMMSYLEPLVLFVLAITVLGDSFETSMLYSYGFIWLGIMFLIAHGIQQIRANRRSP
KPWQKGARVS
>Mature_329_residues
SKSPLISRLPFISIWADSDAQQRTALKGVILAIVSNLLFGVLYFYSSLLQPLTGTQVFIWRMLSMWVVLVGFLAITGRLS
FHINRLRELSSFKQWLWLLLPTPIFFSQLWLFMWAPVNDQGVQVAMGYFLFPLMMVVFGFIFFGERLSRLQWLAVLFAML
GIGLEMLRTQSVSWATLWVCGTYPIYYILRRLQGITAMTGMLVDLSLFLPIAIGYLVIAAPGNFMFVTGSGLYFMLVASL
GVISVLALKTNIDASQILPVNVFGMMSYLEPLVLFVLAITVLGDSFETSMLYSYGFIWLGIMFLIAHGIQQIRANRRSPK
PWQKGARVS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=305, Percent_Identity=26.5573770491803, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 37312; Mature: 37181

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSPLISRLPFISIWADSDAQQRTALKGVILAIVSNLLFGVLYFYSSLLQPLTGTQVFI
CCCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
WRMLSMWVVLVGFLAITGRLSFHINRLRELSSFKQWLWLLLPTPIFFSQLWLFMWAPVND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
QGVQVAMGYFLFPLMMVVFGFIFFGERLSRLQWLAVLFAMLGIGLEMLRTQSVSWATLWV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
CGTYPIYYILRRLQGITAMTGMLVDLSLFLPIAIGYLVIAAPGNFMFVTGSGLYFMLVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCHHHHHHHH
LGVISVLALKTNIDASQILPVNVFGMMSYLEPLVLFVLAITVLGDSFETSMLYSYGFIWL
HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GIMFLIAHGIQQIRANRRSPKPWQKGARVS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKSPLISRLPFISIWADSDAQQRTALKGVILAIVSNLLFGVLYFYSSLLQPLTGTQVFI
CCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH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HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]