| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148653510
Identifier: 148653510
GI number: 148653510
Start: 2119641
End: 2120540
Strand: Direct
Name: 148653510
Synonym: PsycPRwf_1713
Alternate gene names: NA
Gene position: 2119641-2120540 (Clockwise)
Preceding gene: 148653509
Following gene: 148653511
Centisome position: 71.15
GC content: 47.11
Gene sequence:
>900_bases ATGTCTCTCATTGCTTTTTTTGGTGCTCTTGAAAGTGGCCTCATCTATGCCTTAGTGGCTTTAGGTGTCCTACTTTCTTT TCGAACCCTAGATTTCCCAGATTTGACAGCAGATGGTAGCTTCCCGCTGGGTGGCGCGATTGCTGGTATCTCTATTGTGT CTGGTATAGACCCCTGGATTGCTTGTGGTTTGGGTATGCTCGCTGGTGCAGCCGCTGGTGTGGTCACTGCTTTTTTACAC GTGAAGTTGGGAATTTTGCAGCTTTTGGCCAGTATTTTGGTCATGGTCGCTTTGTACTCAGTCAACCTACGTATTATGGG TGCCCCTAACTTACCTTTGCTGGGTGAGCAAACGGTATTTAGCACGTTGGTGACCAATGAAAATGGATACTGGATGCGCT GCTTGATTATCGGGGCGGTGGTATTGGTAGCCAAGCTGATTCTGGACTGGTTCTTTAGTACAGAAGCCGGTCTTTCGATG CGCGCTACTGGATCAAACCTACGTATGGCACAGGCTCAAGGTATTAATACCTCATGGATGACGGTCATTGGTATGGCCAT CTCTAACGCCTTGATTGCTTTGGGCGGCGCACTATTTGTGCAGACCCAAGGCGGCGCTGATATCTCTATTGGTATTGGTA CCATTGTTATTGGTCTGGCTGCGGTTATTATTGGTGAGACCATTATCCCCGCTAAGCGTATTTGGCTAATTACCCTTGCG GTTATTTTAGGTGCGGTTATCTATAAGCTATTTATTCAGGTGGCTTTATCGAGCAGTACCTTACGCAGTATTGGCTTTGG CTCGCAAGACTTGAACTTAATCACAGCGTTATTGGTGGTCATTGCTCTACAACTGCCATCCATTAAGTCAAAACTGTTGT CCGGTCGCCGTAGTAGCTAA
Upstream 100 bases:
>100_bases ACTGTCTATTGACTGTGCTGGTATATTATTTTATTTAAGTGTTGCCAGCTCACATAATCAATAGTAGCAAGCTGAACACT AAGCGGTGGCTTAATCTCTT
Downstream 100 bases:
>100_bases CCTTTATTAACCATTTAATTCAGACCCTCTGAAATAAGAAGGATATCGCCTTATGATGCAAGCCAATGACCTACGACTGA CCTTTAACCGAGGTACTCCG
Product: inner-membrane translocator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MSLIAFFGALESGLIYALVALGVLLSFRTLDFPDLTADGSFPLGGAIAGISIVSGIDPWIACGLGMLAGAAAGVVTAFLH VKLGILQLLASILVMVALYSVNLRIMGAPNLPLLGEQTVFSTLVTNENGYWMRCLIIGAVVLVAKLILDWFFSTEAGLSM RATGSNLRMAQAQGINTSWMTVIGMAISNALIALGGALFVQTQGGADISIGIGTIVIGLAAVIIGETIIPAKRIWLITLA VILGAVIYKLFIQVALSSSTLRSIGFGSQDLNLITALLVVIALQLPSIKSKLLSGRRSS
Sequences:
>Translated_299_residues MSLIAFFGALESGLIYALVALGVLLSFRTLDFPDLTADGSFPLGGAIAGISIVSGIDPWIACGLGMLAGAAAGVVTAFLH VKLGILQLLASILVMVALYSVNLRIMGAPNLPLLGEQTVFSTLVTNENGYWMRCLIIGAVVLVAKLILDWFFSTEAGLSM RATGSNLRMAQAQGINTSWMTVIGMAISNALIALGGALFVQTQGGADISIGIGTIVIGLAAVIIGETIIPAKRIWLITLA VILGAVIYKLFIQVALSSSTLRSIGFGSQDLNLITALLVVIALQLPSIKSKLLSGRRSS >Mature_298_residues SLIAFFGALESGLIYALVALGVLLSFRTLDFPDLTADGSFPLGGAIAGISIVSGIDPWIACGLGMLAGAAAGVVTAFLHV KLGILQLLASILVMVALYSVNLRIMGAPNLPLLGEQTVFSTLVTNENGYWMRCLIIGAVVLVAKLILDWFFSTEAGLSMR ATGSNLRMAQAQGINTSWMTVIGMAISNALIALGGALFVQTQGGADISIGIGTIVIGLAAVIIGETIIPAKRIWLITLAV ILGAVIYKLFIQVALSSSTLRSIGFGSQDLNLITALLVVIALQLPSIKSKLLSGRRSS
Specific function: Unknown
COG id: COG4120
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 31102; Mature: 30971
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIAFFGALESGLIYALVALGVLLSFRTLDFPDLTADGSFPLGGAIAGISIVSGIDPWI CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH ACGLGMLAGAAAGVVTAFLHVKLGILQLLASILVMVALYSVNLRIMGAPNLPLLGEQTVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHH STLVTNENGYWMRCLIIGAVVLVAKLILDWFFSTEAGLSMRATGSNLRMAQAQGINTSWM HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHCCCCHHHH TVIGMAISNALIALGGALFVQTQGGADISIGIGTIVIGLAAVIIGETIIPAKRIWLITLA HHHHHHHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH VILGAVIYKLFIQVALSSSTLRSIGFGSQDLNLITALLVVIALQLPSIKSKLLSGRRSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC >Mature Secondary Structure SLIAFFGALESGLIYALVALGVLLSFRTLDFPDLTADGSFPLGGAIAGISIVSGIDPWI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH ACGLGMLAGAAAGVVTAFLHVKLGILQLLASILVMVALYSVNLRIMGAPNLPLLGEQTVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHH STLVTNENGYWMRCLIIGAVVLVAKLILDWFFSTEAGLSMRATGSNLRMAQAQGINTSWM HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHCCCCHHHH TVIGMAISNALIALGGALFVQTQGGADISIGIGTIVIGLAAVIIGETIIPAKRIWLITLA HHHHHHHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH VILGAVIYKLFIQVALSSSTLRSIGFGSQDLNLITALLVVIALQLPSIKSKLLSGRRSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]