| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148653509
Identifier: 148653509
GI number: 148653509
Start: 2118258
End: 2119289
Strand: Direct
Name: 148653509
Synonym: PsycPRwf_1712
Alternate gene names: NA
Gene position: 2118258-2119289 (Clockwise)
Preceding gene: 148653508
Following gene: 148653510
Centisome position: 71.11
GC content: 49.03
Gene sequence:
>1032_bases ATGTTCAACCCCAATCGTTTTGTTAAGACCCTTATGTGGGGCGGTGTTGCTACCGCCATTTTAGCGGGTTGTAACCAGCA GCCGAGTACAGATACCGCCGCGCAAAGCAGCGATGACACCAAAGCTGGCACCTCAAGCGAAGTCAAGCACGTGGCCATTA CCGCCATTGTTGAGCATCCTGCACTAGATGCTGTGCGTCAAGGGGTTGTTGAGGAGCTTGCCGAAGAAGGATTTGTGGAA GGCAAAAATCTTGAGATTAACTTCCAAAGTGCCCAAGGCAACACCGCCACCGCCGGTCAGATTGCCAAACAATTTGTCGG CGACAACCCCGATGTTATCGTGGCCATTGCAACCCCATCTGCCCAGTCTGTGGCCGCAGCAACCAATACCATTCCTTTGG TATTCTCAGCGGTGACCGATCCTGTAGAAGCCAAGCTATTAAAAAGCATGGATGGCTCTGGCACCAACGTAACGGGCGCC TCTGATGCCCTACCCTACGCGCCGCAAATTGACTTGATGAAGCAGATTATTCCTAGCCTAAAAAATGTCGGCTACGTATA CAGCCCTGGTGAAGTCAACTCTACGGTCATCTTAAAGAATCTACAAGAACAGCTACAGCCTATGGGCATCACTGTGCACT CAGCACCAGCACAAAAAAGTAATGACATCGCTATGGCAGCTCGCAGTATTGCTGACAAAGTAGACGTTATCTATACCTCA ACTGACAACAACGTTGTGTCCGCTTACGAGTCGCTATATCAAGTGGCCAAAGAAAGCAAAGTACCATTAATCGCCTCTGA TACCAGCTCGGTTGAGCGTGGCGCCATTGCTGCCTTAGGCGTGAACTATCATGACTTAGGTCGTGAAACTGGTAAAATCG TCGGCCGTATCTTAAAGGGTGAAAAACCAGGTGATATTCCTGTGTATACCCCAACTTCTTTAGACTTATATGTCAGCCCC ACTCACGCTAAAGAGCAAGGCATTGAGCTGTCAAAAGAAGTGATGGACCAAGCCAAAGAAGTGGTTAAATAG
Upstream 100 bases:
>100_bases TTAACTATTTAGGCAATGCTGAAGCAAACAGCAGATTTACCAGCAAACACGTCTTATAAATGGACCTTTATAAGAGCATT TTATTCTAGGAGATACACCC
Downstream 100 bases:
>100_bases ACCGTTTTAGGGCAAAAATATTGAGTCAGTCAAATAAAAGGCACATGATCTTCATGTGCTTTTTAGATTGTTTAAATTTG GCGTTATTTGCTAGAATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP THAKEQGIELSKEVMDQAKEVVK
Sequences:
>Translated_343_residues MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP THAKEQGIELSKEVMDQAKEVVK >Mature_343_residues MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP THAKEQGIELSKEVMDQAKEVVK
Specific function: Unknown
COG id: COG2984
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007487 [H]
Pfam domain/function: PF04392 ABC_sub_bind [H]
EC number: NA
Molecular weight: Translated: 36166; Mature: 36166
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEHHHHCC ALDAVRQGVVEELAEEGFVEGKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPS HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC AQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGASDALPYAPQIDLMKQIIPSL CHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS HHCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEC TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKG CCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCC EKPGDIPVYTPTSLDLYVSPTHAKEQGIELSKEVMDQAKEVVK CCCCCCEEECCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHCC >Mature Secondary Structure MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEHHHHCC ALDAVRQGVVEELAEEGFVEGKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPS HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC AQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGASDALPYAPQIDLMKQIIPSL CHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS HHCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEC TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKG CCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCC EKPGDIPVYTPTSLDLYVSPTHAKEQGIELSKEVMDQAKEVVK CCCCCCEEECCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]