Definition Psychrobacter sp. PRwf-1 chromosome, complete genome.
Accession NC_009524
Length 2,978,976

Click here to switch to the map view.

The map label for this gene is 148653509

Identifier: 148653509

GI number: 148653509

Start: 2118258

End: 2119289

Strand: Direct

Name: 148653509

Synonym: PsycPRwf_1712

Alternate gene names: NA

Gene position: 2118258-2119289 (Clockwise)

Preceding gene: 148653508

Following gene: 148653510

Centisome position: 71.11

GC content: 49.03

Gene sequence:

>1032_bases
ATGTTCAACCCCAATCGTTTTGTTAAGACCCTTATGTGGGGCGGTGTTGCTACCGCCATTTTAGCGGGTTGTAACCAGCA
GCCGAGTACAGATACCGCCGCGCAAAGCAGCGATGACACCAAAGCTGGCACCTCAAGCGAAGTCAAGCACGTGGCCATTA
CCGCCATTGTTGAGCATCCTGCACTAGATGCTGTGCGTCAAGGGGTTGTTGAGGAGCTTGCCGAAGAAGGATTTGTGGAA
GGCAAAAATCTTGAGATTAACTTCCAAAGTGCCCAAGGCAACACCGCCACCGCCGGTCAGATTGCCAAACAATTTGTCGG
CGACAACCCCGATGTTATCGTGGCCATTGCAACCCCATCTGCCCAGTCTGTGGCCGCAGCAACCAATACCATTCCTTTGG
TATTCTCAGCGGTGACCGATCCTGTAGAAGCCAAGCTATTAAAAAGCATGGATGGCTCTGGCACCAACGTAACGGGCGCC
TCTGATGCCCTACCCTACGCGCCGCAAATTGACTTGATGAAGCAGATTATTCCTAGCCTAAAAAATGTCGGCTACGTATA
CAGCCCTGGTGAAGTCAACTCTACGGTCATCTTAAAGAATCTACAAGAACAGCTACAGCCTATGGGCATCACTGTGCACT
CAGCACCAGCACAAAAAAGTAATGACATCGCTATGGCAGCTCGCAGTATTGCTGACAAAGTAGACGTTATCTATACCTCA
ACTGACAACAACGTTGTGTCCGCTTACGAGTCGCTATATCAAGTGGCCAAAGAAAGCAAAGTACCATTAATCGCCTCTGA
TACCAGCTCGGTTGAGCGTGGCGCCATTGCTGCCTTAGGCGTGAACTATCATGACTTAGGTCGTGAAACTGGTAAAATCG
TCGGCCGTATCTTAAAGGGTGAAAAACCAGGTGATATTCCTGTGTATACCCCAACTTCTTTAGACTTATATGTCAGCCCC
ACTCACGCTAAAGAGCAAGGCATTGAGCTGTCAAAAGAAGTGATGGACCAAGCCAAAGAAGTGGTTAAATAG

Upstream 100 bases:

>100_bases
TTAACTATTTAGGCAATGCTGAAGCAAACAGCAGATTTACCAGCAAACACGTCTTATAAATGGACCTTTATAAGAGCATT
TTATTCTAGGAGATACACCC

Downstream 100 bases:

>100_bases
ACCGTTTTAGGGCAAAAATATTGAGTCAGTCAAATAAAAGGCACATGATCTTCATGTGCTTTTTAGATTGTTTAAATTTG
GCGTTATTTGCTAGAATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE
GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA
SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS
TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP
THAKEQGIELSKEVMDQAKEVVK

Sequences:

>Translated_343_residues
MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE
GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA
SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS
TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP
THAKEQGIELSKEVMDQAKEVVK
>Mature_343_residues
MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHPALDAVRQGVVEELAEEGFVE
GKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPSAQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGA
SDALPYAPQIDLMKQIIPSLKNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS
TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKGEKPGDIPVYTPTSLDLYVSP
THAKEQGIELSKEVMDQAKEVVK

Specific function: Unknown

COG id: COG2984

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007487 [H]

Pfam domain/function: PF04392 ABC_sub_bind [H]

EC number: NA

Molecular weight: Translated: 36166; Mature: 36166

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEHHHHCC
ALDAVRQGVVEELAEEGFVEGKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPS
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
AQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGASDALPYAPQIDLMKQIIPSL
CHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS
HHCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEC
TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKG
CCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCC
EKPGDIPVYTPTSLDLYVSPTHAKEQGIELSKEVMDQAKEVVK
CCCCCCEEECCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNPNRFVKTLMWGGVATAILAGCNQQPSTDTAAQSSDDTKAGTSSEVKHVAITAIVEHP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEHHHHCC
ALDAVRQGVVEELAEEGFVEGKNLEINFQSAQGNTATAGQIAKQFVGDNPDVIVAIATPS
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
AQSVAAATNTIPLVFSAVTDPVEAKLLKSMDGSGTNVTGASDALPYAPQIDLMKQIIPSL
CHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KNVGYVYSPGEVNSTVILKNLQEQLQPMGITVHSAPAQKSNDIAMAARSIADKVDVIYTS
HHCCEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEC
TDNNVVSAYESLYQVAKESKVPLIASDTSSVERGAIAALGVNYHDLGRETGKIVGRILKG
CCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCC
EKPGDIPVYTPTSLDLYVSPTHAKEQGIELSKEVMDQAKEVVK
CCCCCCEEECCCCEEEEECCCCCHHHCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]