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The map label for this gene is nrdB [H]

Identifier: 148653376

GI number: 148653376

Start: 1940551

End: 1941684

Strand: Direct

Name: nrdB [H]

Synonym: PsycPRwf_1578

Alternate gene names: 148653376

Gene position: 1940551-1941684 (Clockwise)

Preceding gene: 148653375

Following gene: 148653377

Centisome position: 65.14

GC content: 43.03

Gene sequence:

>1134_bases
ATGACGTACTCAATCTTTAGCCAAACAAAAAATGACGCGCTTAAAGAGCCGATGTTTTTTGGTCAGCCCGTTAACGTAGC
ACGCTATGACCAACAAAAGCACCCCATCTTTGAACAACTTATCGAAAAGCAGTTGTCATTTTTCTGGCGTCCAGAAGAGG
TTGATGTATCAAAAGACCGTATCGACTACGGCAACTTGTCCACGCATGAGCAGCATATTTTTATCAGTAACCTAAAATAC
CAAACCTTGCTAGACTCCATTCAAGGTCGTAGCCCAAACGTGGTGCTATTGCCGTTGGTATCTATCCCTGAGCTTGAGAC
TTGGATTGAAACATGGTCATTCTCCGAGACCATCCACTCACGCAGCTATACCCATATTATTCGTAATATCGTCAACGACC
CTGCTGTGGTATTCGATGACATTATGGAAAATGAGCACATTCTACAGCGTGCTTCAGACATTGCTTATTATTATGATGAC
TTGTACCAACATTCACAGCTATATAGCCTATTTGGCCCAGGTACACACATCGTCAATGGTGAAGAAAAGTATGTCGACTT
ACGCAAACTAAAAAAACAGCTTTATCTGTGCTTGATGGCCGTTAACGTATTAGAGGCCATTCGCTTCTACGTATCATTCG
CCTGCTCGTTTGCCTTTGCTGAGCGCAAACTGATGGAAGGTAACGCCAAGATCATTAAGCTTATCGCCCGTGATGAAGCG
CTGCATTTAACCAGTACCCAGCACATGATTAATATCATGGCGTCAGGCAAAGATGATCCTGAAATGGCAGAGATTTCTGC
ACAATGTCATAACGAGAGTATTGAGATTTTCCGAAAAGCGGCTGAACAAGAAAAAGAATGGGCAGGTTATCTGTTTAAAG
ACGGCTCTATGATTGGCCTAAACAAAGACATCCTATGCCAGTATGTCGAGTATATTACTAACTTACGTATGGAAGCGGTC
GGCTTACCGGGTATCTTCCCTGAATCTAAGAGCAACCCTATTCCTTGGATTAATACTTGGTTGTCATCAGATAACGTACA
GGTAGCACCGCAAGAGACTGAAATCAGCTCCTACCTTGTCGGCCAAATTGACTCTGATTTATCAGACAGTGACTTTGATG
ACTTCGAGTTGTAA

Upstream 100 bases:

>100_bases
TTGTTGCCCTACTTTGCGATGAAATCTATCCAACTTTATCGCAACTGCCTATTAGAACTCATAAAACTTAGAACCTCTCA
TAAATATAAAAGGTAGAATC

Downstream 100 bases:

>100_bases
TACTATAAGCGTATAAACTTATTAGACACTGGCTTATTTAAACTTACTGACTGTTTTAAACTTACTGACTGTGGTTTTTT
GCTATGACTTGGGTATTTAC

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTYSIFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDYGNLSTHEQHIFISNLKY
QTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDD
LYQHSQLYSLFGPGTHIVNGEEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
LHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAV
GLPGIFPESKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL

Sequences:

>Translated_377_residues
MTYSIFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDYGNLSTHEQHIFISNLKY
QTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDD
LYQHSQLYSLFGPGTHIVNGEEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
LHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAV
GLPGIFPESKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL
>Mature_376_residues
TYSIFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDYGNLSTHEQHIFISNLKYQ
TLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDL
YQHSQLYSLFGPGTHIVNGEEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEAL
HLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVG
LPGIFPESKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1788567, Length=377, Percent_Identity=75.5968169761273, Blast_Score=606, Evalue=1e-175,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 43529; Mature: 43398

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSIFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDR
CCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
IDYGNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHS
CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNG
HHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
EEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE
LHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGL
EEEECHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEECCCEECC
NKDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSDNVQVAPQETEISSYLV
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHEECCCCEEECCCHHHHHHHHH
GQIDSDLSDSDFDDFEL
HHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TYSIFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDR
CCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
IDYGNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHS
CCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNG
HHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
EEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE
LHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGL
EEEECHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEECCCEECC
NKDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSDNVQVAPQETEISSYLV
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHEECCCCEEECCCHHHHHHHHH
GQIDSDLSDSDFDDFEL
HHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]