| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is yqhA [C]
Identifier: 148653144
GI number: 148653144
Start: 1638533
End: 1639057
Strand: Direct
Name: yqhA [C]
Synonym: PsycPRwf_1342
Alternate gene names: 148653144
Gene position: 1638533-1639057 (Clockwise)
Preceding gene: 148653143
Following gene: 148653145
Centisome position: 55.0
GC content: 35.62
Gene sequence:
>525_bases ATGCCTAAGAGGGCTGAGCAAAGTCTAGAGAAAACTATATTTAACAGTCGCTGGCTGTTAGCTCCATTTTATTTAGGGCT TATAATAGGAATTATTCTTCTTTTCATAAAATTTTTTCAAAAAATCTGGTATATCACTACGCATGTATTCACTGCTAGCG AAGCCGATGTAATTGTTGGCACGTTAGTTTTAATAGATATAGCACTAGTGGCCAGCTTATTACTTATTATTGTATTTAGT GGGTACGAAATATTTGTTTCAAAAATTGATACAGGAGACCATGAAGATCGTCCGGGCTGGATGGGTACCATTGATTTCTC TGGCTTAAAACTAAAGGTCATTAGTGCCATTGTTGCTATTTCTGCAATTGACCTTCTCAAATCATTTATGAATATACCTG ACCAGATAAGTGATGGGGACGCTAATAGACTAATGTGGAAGGTCGTTATACATATGACATTCGTTTTATCTGGACTATTG TTTGCTTTAATGGATAAGATTGCTGGTGATACTAAAAAGCACTAA
Upstream 100 bases:
>100_bases AGTGGCGGTTTTTCATCCTCTTAAAGTTAATGACTTGCCAGCAGTACATTTGCTAAAATTAAAAAACCCATCGAATCATG AATCAAAAAAGAGGACACAT
Downstream 100 bases:
>100_bases ATAAAACATTTGGATGAAGATCTATAAGTTAACTAAACCGCCATAGTGGCGGTTTTTTTGTGCTCAATACCAAACTAATA GTTCTTTCAGTAATGATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MPKRAEQSLEKTIFNSRWLLAPFYLGLIIGIILLFIKFFQKIWYITTHVFTASEADVIVGTLVLIDIALVASLLLIIVFS GYEIFVSKIDTGDHEDRPGWMGTIDFSGLKLKVISAIVAISAIDLLKSFMNIPDQISDGDANRLMWKVVIHMTFVLSGLL FALMDKIAGDTKKH
Sequences:
>Translated_174_residues MPKRAEQSLEKTIFNSRWLLAPFYLGLIIGIILLFIKFFQKIWYITTHVFTASEADVIVGTLVLIDIALVASLLLIIVFS GYEIFVSKIDTGDHEDRPGWMGTIDFSGLKLKVISAIVAISAIDLLKSFMNIPDQISDGDANRLMWKVVIHMTFVLSGLL FALMDKIAGDTKKH >Mature_173_residues PKRAEQSLEKTIFNSRWLLAPFYLGLIIGIILLFIKFFQKIWYITTHVFTASEADVIVGTLVLIDIALVASLLLIIVFSG YEIFVSKIDTGDHEDRPGWMGTIDFSGLKLKVISAIVAISAIDLLKSFMNIPDQISDGDANRLMWKVVIHMTFVLSGLLF ALMDKIAGDTKKH
Specific function: Unknown
COG id: COG2862
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0114 family [H]
Homologues:
Organism=Escherichia coli, GI1789376, Length=166, Percent_Identity=43.3734939759036, Blast_Score=140, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005134 - InterPro: IPR020761 - InterPro: IPR020765 [H]
Pfam domain/function: PF03350 UPF0114 [H]
EC number: NA
Molecular weight: Translated: 19489; Mature: 19358
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRAEQSLEKTIFNSRWLLAPFYLGLIIGIILLFIKFFQKIWYITTHVFTASEADVIVG CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TLVLIDIALVASLLLIIVFSGYEIFVSKIDTGDHEDRPGWMGTIDFSGLKLKVISAIVAI HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH SAIDLLKSFMNIPDQISDGDANRLMWKVVIHMTFVLSGLLFALMDKIAGDTKKH HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PKRAEQSLEKTIFNSRWLLAPFYLGLIIGIILLFIKFFQKIWYITTHVFTASEADVIVG CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TLVLIDIALVASLLLIIVFSGYEIFVSKIDTGDHEDRPGWMGTIDFSGLKLKVISAIVAI HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH SAIDLLKSFMNIPDQISDGDANRLMWKVVIHMTFVLSGLLFALMDKIAGDTKKH HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA