| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is 148653145
Identifier: 148653145
GI number: 148653145
Start: 1639382
End: 1640698
Strand: Direct
Name: 148653145
Synonym: PsycPRwf_1343
Alternate gene names: NA
Gene position: 1639382-1640698 (Clockwise)
Preceding gene: 148653144
Following gene: 148653146
Centisome position: 55.03
GC content: 40.32
Gene sequence:
>1317_bases ATGGTTATTTTTTGCCTCATCAACATCCCTGTTGCAGTTGCAATCGTTTTAGCTGCATTACTTGGCGGTTTACACGCAGG TATGGATTTTCCGGCAATTTTAGAAAGTTTAAACGATAATATATTGGGTGGCGCTCAGGTTGGCATGACCTATATTATGG TTGGGGCTTTCGCAGTTGCTTTAGCTAGAAGTGGTATTCTTGATTGGTTGGCACAGAAAATGACCCACCGCCTAAACAGG GATAGCGTACAAGTACGAAACCAAGTTAAGTGGACTTTATTTTTTATCTTTATCGTCGCCTCCCTGTTATCGCAAAATTT AATACCTGTCCATATCGCTTTTATACCCGTATTAATCCCTCCCCTACTAAATATGATGAATAAGCTAAAAATAGATAGAC GAGCAGTCGCCTGTATTTTGGCCTGTGGTATCAGCTCATCATACTTACTATTGCCATTCGGTTTTGGCGCTATATATCTC AATGAAATACTATTAGAGAATATAAATACTGTAGGAGGTGGTTTAGGACTAGAAGCAACTGCTGGCATGGCACCTAAGGC TATGTTTTTCCCAGTTATGGGTATACTAGCTGGTATGCTCGTTGCTGTATTTATTAGTTATCGTAAGCCACGCGAGTATG CTTTAAATTTAGATACCATGAACACAGAAGAATACAAAGTTGTTAGTGCTATTAACTGGCAACCATTATTGATGACTTTA TTAGCTGTAGTAGCGGTATTACTTTTTCAGGTGTTTTTTGATTCTCTGTTTATAGGTGCAATGATTGGCTTTATGATTCT TGGTTTTTCAGGTATTTATAGTTGGAAAGGGCAAGATGATGTATTCACTCAAGGCATTCGATTAATGGCTGAAATTGCTG TCATTATTACTATTGCCTCTGGATTTGCAGGTGTTTTGACTGCCACAGGGGATATCGACCCCCTTGTCGCCTCTGCAACA GAGTTCTTTGGTAATAATCAGTTGCTCGGTGCTGCAATAATGCTGTTAGTTGGACTGTTTATCACAATCGGGTTTGGTGA CTCTTTTGCTTCAGTGCCTATACTAGCACCTATATACATCCCTTTAGCTGTTGCGCTGGGCTTTTCACCACTTGCCACTA TAGCTTTATTAGGAGCATCAGCCGCACTAGGTGATGCCGGATCGCCCGCTTCAACAATTACTCTTGGTGCTACTGCTGGT CTTAATGCAGATGGACAGCACGACCATGTTAAAGACAGTGTCATTCCAACTTTTTTACATGCAAATATAGGTATGTTGCT TTTCACTTGGATTGCAGCTGTTTGGATTTTAAATTAA
Upstream 100 bases:
>100_bases AAGCAGGGCTTTACCTGTCTTAGTGGGACTGATTACAGTTTATAGTCTGTTAATACTTTTATCAGTACAAATCAACGCTG TAGCACTAGCCATTTTGTTG
Downstream 100 bases:
>100_bases TGAAATAGTGCTTATCATCCATTTTTATAGAAATCAACCGCCCTACCAGGGCGGTTTTTTTGTTTCTGCCATTCAAGAAT AAAGAGTAAATGAGCAGAAA
Product: Na+/H+ antiporter NhaC
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MVIFCLINIPVAVAIVLAALLGGLHAGMDFPAILESLNDNILGGAQVGMTYIMVGAFAVALARSGILDWLAQKMTHRLNR DSVQVRNQVKWTLFFIFIVASLLSQNLIPVHIAFIPVLIPPLLNMMNKLKIDRRAVACILACGISSSYLLLPFGFGAIYL NEILLENINTVGGGLGLEATAGMAPKAMFFPVMGILAGMLVAVFISYRKPREYALNLDTMNTEEYKVVSAINWQPLLMTL LAVVAVLLFQVFFDSLFIGAMIGFMILGFSGIYSWKGQDDVFTQGIRLMAEIAVIITIASGFAGVLTATGDIDPLVASAT EFFGNNQLLGAAIMLLVGLFITIGFGDSFASVPILAPIYIPLAVALGFSPLATIALLGASAALGDAGSPASTITLGATAG LNADGQHDHVKDSVIPTFLHANIGMLLFTWIAAVWILN
Sequences:
>Translated_438_residues MVIFCLINIPVAVAIVLAALLGGLHAGMDFPAILESLNDNILGGAQVGMTYIMVGAFAVALARSGILDWLAQKMTHRLNR DSVQVRNQVKWTLFFIFIVASLLSQNLIPVHIAFIPVLIPPLLNMMNKLKIDRRAVACILACGISSSYLLLPFGFGAIYL NEILLENINTVGGGLGLEATAGMAPKAMFFPVMGILAGMLVAVFISYRKPREYALNLDTMNTEEYKVVSAINWQPLLMTL LAVVAVLLFQVFFDSLFIGAMIGFMILGFSGIYSWKGQDDVFTQGIRLMAEIAVIITIASGFAGVLTATGDIDPLVASAT EFFGNNQLLGAAIMLLVGLFITIGFGDSFASVPILAPIYIPLAVALGFSPLATIALLGASAALGDAGSPASTITLGATAG LNADGQHDHVKDSVIPTFLHANIGMLLFTWIAAVWILN >Mature_438_residues MVIFCLINIPVAVAIVLAALLGGLHAGMDFPAILESLNDNILGGAQVGMTYIMVGAFAVALARSGILDWLAQKMTHRLNR DSVQVRNQVKWTLFFIFIVASLLSQNLIPVHIAFIPVLIPPLLNMMNKLKIDRRAVACILACGISSSYLLLPFGFGAIYL NEILLENINTVGGGLGLEATAGMAPKAMFFPVMGILAGMLVAVFISYRKPREYALNLDTMNTEEYKVVSAINWQPLLMTL LAVVAVLLFQVFFDSLFIGAMIGFMILGFSGIYSWKGQDDVFTQGIRLMAEIAVIITIASGFAGVLTATGDIDPLVASAT EFFGNNQLLGAAIMLLVGLFITIGFGDSFASVPILAPIYIPLAVALGFSPLATIALLGASAALGDAGSPASTITLGATAG LNADGQHDHVKDSVIPTFLHANIGMLLFTWIAAVWILN
Specific function: Unknown
COG id: COG2056
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018461 [H]
Pfam domain/function: PF03553 Na_H_antiporter [H]
EC number: NA
Molecular weight: Translated: 46552; Mature: 46552
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIFCLINIPVAVAIVLAALLGGLHAGMDFPAILESLNDNILGGAQVGMTYIMVGAFAVA CEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LARSGILDWLAQKMTHRLNRDSVQVRNQVKWTLFFIFIVASLLSQNLIPVHIAFIPVLIP HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH PLLNMMNKLKIDRRAVACILACGISSSYLLLPFGFGAIYLNEILLENINTVGGGLGLEAT HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCC AGMAPKAMFFPVMGILAGMLVAVFISYRKPREYALNLDTMNTEEYKVVSAINWQPLLMTL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCEEEEEECCCHHHHHHH LAVVAVLLFQVFFDSLFIGAMIGFMILGFSGIYSWKGQDDVFTQGIRLMAEIAVIITIAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC GFAGVLTATGDIDPLVASATEFFGNNQLLGAAIMLLVGLFITIGFGDSFASVPILAPIYI CCHHHEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH PLAVALGFSPLATIALLGASAALGDAGSPASTITLGATAGLNADGQHDHVKDSVIPTFLH HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH ANIGMLLFTWIAAVWILN HHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVIFCLINIPVAVAIVLAALLGGLHAGMDFPAILESLNDNILGGAQVGMTYIMVGAFAVA CEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LARSGILDWLAQKMTHRLNRDSVQVRNQVKWTLFFIFIVASLLSQNLIPVHIAFIPVLIP HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH PLLNMMNKLKIDRRAVACILACGISSSYLLLPFGFGAIYLNEILLENINTVGGGLGLEAT HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCC AGMAPKAMFFPVMGILAGMLVAVFISYRKPREYALNLDTMNTEEYKVVSAINWQPLLMTL CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCEEEEEECCCHHHHHHH LAVVAVLLFQVFFDSLFIGAMIGFMILGFSGIYSWKGQDDVFTQGIRLMAEIAVIITIAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC GFAGVLTATGDIDPLVASATEFFGNNQLLGAAIMLLVGLFITIGFGDSFASVPILAPIYI CCHHHEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH PLAVALGFSPLATIALLGASAALGDAGSPASTITLGATAGLNADGQHDHVKDSVIPTFLH HHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH ANIGMLLFTWIAAVWILN HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739; 8021208 [H]