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The map label for this gene is intF [C]

Identifier: 148653076

GI number: 148653076

Start: 1567080

End: 1568357

Strand: Direct

Name: intF [C]

Synonym: PsycPRwf_1272

Alternate gene names: 148653076

Gene position: 1567080-1568357 (Clockwise)

Preceding gene: 148653075

Following gene: 148653077

Centisome position: 52.6

GC content: 39.67

Gene sequence:

>1278_bases
ATGAAAGTTAAGCTAACGAAGAAGTTTATTGATGATCTACCACTTACTGAAAGTGGCTATAAGATATATCCTGATGAAGC
TTTGACGGGTTTTGCATTATACGTTGGCACTAAGAGCAAGCGTTATATTTTGAACAGACGTATTAACAAAAAAATGTACC
GCACGCTAGTTGATGAAGTTCACATGACTACTCTAACAGCCGCACGTGAAAAAGCAACTGCAATGATGGTAAATATCAGA
CAAGGATCACACCCTTACGAGGGATTGCATGAGCTACCAGAGATTGAAGATGAAGAGAGCAAGGCACCACAAGTACCTAC
TTTGCTAGAGGCTTATAATTATTTTAAAGAAATGAAATCAGAGCTTTCAGATGGAACTATAACAACCTATGACCGACAGA
TATTAGGTAAGCTTAGTGACTGGCTTGATAAGCCACTTAACGATATAACCAAGGCCATGATCAGCAAAAAACATAAAGAA
ATAAGTGCCAATAGCAAGGCTCAAGCTAATGCGACTATGAGGGCATTAAGATCAGTTTGGAATTATTGTAGAGATAGTTT
TTTAGACGAGAATGAAGACTTCATAATCAAAGAACAGCCTATCAAGATACTTAATGCCAAAAAGGACTGGAATAATATAA
AACCACGTACCAGGCATGTAGCAGAAGAAAATCTAGGCCAGTTCTTTAAGACATTACTAAAATACACCGATCGCAGCTCG
CACATGCAAGCACCACATAGTAATAATGCTCGCGATCTTATGCTAATGTTTATGCTAACTGGCGTGAGACTTAATGAAGG
TCAAAATCTTGAGTGGTCCGACGTTGATCTTGATAACGGTTATATCGTATTTAGAGATACAAAAAACGGATCAGATTATG
ACATGCCACTGGGCAAAATACTTGCAGCATTACTCAAAGAACGCAAGAGGTTAAGTGATGGTAGTCGTTGGGTTTTCCCA
AGTAGTCAAAGCAATACTGACGGACCTATAACTGACTTAACCCGTAGCTACAAACGCATTGGTGAGTTAAATGGCATGTA
TATCACACCCCACGATTTAAGGCGCACGTTTGGCACCGTGGCCAACAGCTTGAACATCAACTACCCAGTCCTTAAAAGGC
TGTTAAATCATCGTGAGACCAAGGCAACCGATGATGTGACATTGCAGTACGTGCAAGTGTCCCAGAAGCAGCTTAGAACG
GCTTTAAATCAGATTGAGAAACTGTATTGCAAGCAAGCTGAAATGACTCAAGATGAAGTTATAGCAAAACTCATATAA

Upstream 100 bases:

>100_bases
TCAATTTAATACTTTATATACTTTTTATGTACTTTAATTAAGCTAACTCGTGCTATATGCTATATAGCATTGTTGTTAAT
TGTTGTCTTGAGGGAAGGCT

Downstream 100 bases:

>100_bases
GCTACAATTGTTCATACACTACCCACCCTCTCTATAGGTGGTGGGTAATTTATAGACGGCTAGTTGGAGATAACGCAAAT
AGGATGATTTCCTGGATTTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MKVKLTKKFIDDLPLTESGYKIYPDEALTGFALYVGTKSKRYILNRRINKKMYRTLVDEVHMTTLTAAREKATAMMVNIR
QGSHPYEGLHELPEIEDEESKAPQVPTLLEAYNYFKEMKSELSDGTITTYDRQILGKLSDWLDKPLNDITKAMISKKHKE
ISANSKAQANATMRALRSVWNYCRDSFLDENEDFIIKEQPIKILNAKKDWNNIKPRTRHVAEENLGQFFKTLLKYTDRSS
HMQAPHSNNARDLMLMFMLTGVRLNEGQNLEWSDVDLDNGYIVFRDTKNGSDYDMPLGKILAALLKERKRLSDGSRWVFP
SSQSNTDGPITDLTRSYKRIGELNGMYITPHDLRRTFGTVANSLNINYPVLKRLLNHRETKATDDVTLQYVQVSQKQLRT
ALNQIEKLYCKQAEMTQDEVIAKLI

Sequences:

>Translated_425_residues
MKVKLTKKFIDDLPLTESGYKIYPDEALTGFALYVGTKSKRYILNRRINKKMYRTLVDEVHMTTLTAAREKATAMMVNIR
QGSHPYEGLHELPEIEDEESKAPQVPTLLEAYNYFKEMKSELSDGTITTYDRQILGKLSDWLDKPLNDITKAMISKKHKE
ISANSKAQANATMRALRSVWNYCRDSFLDENEDFIIKEQPIKILNAKKDWNNIKPRTRHVAEENLGQFFKTLLKYTDRSS
HMQAPHSNNARDLMLMFMLTGVRLNEGQNLEWSDVDLDNGYIVFRDTKNGSDYDMPLGKILAALLKERKRLSDGSRWVFP
SSQSNTDGPITDLTRSYKRIGELNGMYITPHDLRRTFGTVANSLNINYPVLKRLLNHRETKATDDVTLQYVQVSQKQLRT
ALNQIEKLYCKQAEMTQDEVIAKLI
>Mature_425_residues
MKVKLTKKFIDDLPLTESGYKIYPDEALTGFALYVGTKSKRYILNRRINKKMYRTLVDEVHMTTLTAAREKATAMMVNIR
QGSHPYEGLHELPEIEDEESKAPQVPTLLEAYNYFKEMKSELSDGTITTYDRQILGKLSDWLDKPLNDITKAMISKKHKE
ISANSKAQANATMRALRSVWNYCRDSFLDENEDFIIKEQPIKILNAKKDWNNIKPRTRHVAEENLGQFFKTLLKYTDRSS
HMQAPHSNNARDLMLMFMLTGVRLNEGQNLEWSDVDLDNGYIVFRDTKNGSDYDMPLGKILAALLKERKRLSDGSRWVFP
SSQSNTDGPITDLTRSYKRIGELNGMYITPHDLRRTFGTVANSLNINYPVLKRLLNHRETKATDDVTLQYVQVSQKQLRT
ALNQIEKLYCKQAEMTQDEVIAKLI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49077; Mature: 49077

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKLTKKFIDDLPLTESGYKIYPDEALTGFALYVGTKSKRYILNRRINKKMYRTLVDEV
CCEEEHHHHHHCCCCCCCCCEECCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
HMTTLTAAREKATAMMVNIRQGSHPYEGLHELPEIEDEESKAPQVPTLLEAYNYFKEMKS
HHHHHHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ELSDGTITTYDRQILGKLSDWLDKPLNDITKAMISKKHKEISANSKAQANATMRALRSVW
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
NYCRDSFLDENEDFIIKEQPIKILNAKKDWNNIKPRTRHVAEENLGQFFKTLLKYTDRSS
HHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
HMQAPHSNNARDLMLMFMLTGVRLNEGQNLEWSDVDLDNGYIVFRDTKNGSDYDMPLGKI
HCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
LAALLKERKRLSDGSRWVFPSSQSNTDGPITDLTRSYKRIGELNGMYITPHDLRRTFGTV
HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHH
ANSLNINYPVLKRLLNHRETKATDDVTLQYVQVSQKQLRTALNQIEKLYCKQAEMTQDEV
HHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IAKLI
HHHCC
>Mature Secondary Structure
MKVKLTKKFIDDLPLTESGYKIYPDEALTGFALYVGTKSKRYILNRRINKKMYRTLVDEV
CCEEEHHHHHHCCCCCCCCCEECCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
HMTTLTAAREKATAMMVNIRQGSHPYEGLHELPEIEDEESKAPQVPTLLEAYNYFKEMKS
HHHHHHHHHHHHHHHEEEECCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ELSDGTITTYDRQILGKLSDWLDKPLNDITKAMISKKHKEISANSKAQANATMRALRSVW
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
NYCRDSFLDENEDFIIKEQPIKILNAKKDWNNIKPRTRHVAEENLGQFFKTLLKYTDRSS
HHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
HMQAPHSNNARDLMLMFMLTGVRLNEGQNLEWSDVDLDNGYIVFRDTKNGSDYDMPLGKI
HCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHH
LAALLKERKRLSDGSRWVFPSSQSNTDGPITDLTRSYKRIGELNGMYITPHDLRRTFGTV
HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHH
ANSLNINYPVLKRLLNHRETKATDDVTLQYVQVSQKQLRTALNQIEKLYCKQAEMTQDEV
HHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IAKLI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA